Experiment: Doxycycline hyclate 0.0002 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt AO353_00465 and AO353_00470 are separated by 10 nucleotides AO353_00470 and AO353_00475 are separated by 106 nucleotides AO353_00475 and AO353_00480 are separated by 170 nucleotides AO353_00480 and AO353_00485 are separated by 3 nucleotides
AO353_00465: AO353_00465 - LexA family transcriptional regulator, at 94,911 to 95,519
_00465
AO353_00470: AO353_00470 - CDP-glycerol--UDP-pyrophosphoryl-N- acetylglucosaminyl-N-acetylmannosamine glycerophosphotransferase, at 95,530 to 96,003
_00470
AO353_00475: AO353_00475 - hypothetical protein, at 96,110 to 96,343
_00475
AO353_00480: AO353_00480 - hypothetical protein, at 96,514 to 97,071
_00480
AO353_00485: AO353_00485 - hypothetical protein, at 97,075 to 98,109
_00485
Position (kb) 96
97
98 Strain fitness (log2 ratio) -2
-1
0
1
2
3
4 at 95.518 kb on - strand at 95.530 kb on - strand at 95.831 kb on + strand, within AO353_00470 at 95.831 kb on + strand, within AO353_00470 at 95.831 kb on + strand, within AO353_00470 at 95.831 kb on + strand, within AO353_00470 at 95.831 kb on + strand, within AO353_00470 at 95.831 kb on + strand, within AO353_00470 at 95.831 kb on + strand, within AO353_00470 at 95.831 kb on + strand, within AO353_00470 at 95.831 kb on + strand, within AO353_00470 at 95.832 kb on - strand, within AO353_00470 at 95.832 kb on - strand, within AO353_00470 at 95.832 kb on - strand, within AO353_00470 at 95.832 kb on - strand, within AO353_00470 at 95.906 kb on + strand, within AO353_00470 at 95.906 kb on + strand, within AO353_00470 at 95.906 kb on + strand, within AO353_00470 at 95.906 kb on + strand, within AO353_00470 at 95.906 kb on + strand, within AO353_00470 at 95.907 kb on - strand, within AO353_00470 at 95.907 kb on - strand, within AO353_00470 at 95.907 kb on - strand, within AO353_00470 at 95.907 kb on - strand, within AO353_00470 at 95.907 kb on - strand, within AO353_00470 at 95.907 kb on - strand, within AO353_00470 at 95.988 kb on + strand at 96.001 kb on + strand at 96.001 kb on + strand at 96.002 kb on - strand at 96.002 kb on - strand at 96.065 kb on - strand at 96.326 kb on + strand at 96.327 kb on - strand at 96.327 kb on - strand at 96.343 kb on + strand at 96.343 kb on + strand at 96.343 kb on + strand at 96.344 kb on - strand at 96.344 kb on - strand at 96.374 kb on + strand at 96.374 kb on + strand at 96.374 kb on + strand at 96.374 kb on + strand at 96.374 kb on + strand at 96.374 kb on + strand at 96.374 kb on + strand at 96.374 kb on + strand at 96.374 kb on + strand at 96.374 kb on + strand at 96.375 kb on - strand at 96.375 kb on - strand at 96.375 kb on - strand at 96.375 kb on - strand at 96.375 kb on - strand at 96.375 kb on - strand at 96.375 kb on - strand at 96.375 kb on - strand at 96.375 kb on - strand at 96.375 kb on - strand at 96.375 kb on - strand at 96.375 kb on - strand at 96.375 kb on - strand at 96.375 kb on - strand at 96.375 kb on - strand at 96.376 kb on + strand at 96.376 kb on + strand at 96.376 kb on + strand at 96.376 kb on + strand at 96.376 kb on + strand at 96.376 kb on + strand at 96.376 kb on + strand at 96.376 kb on + strand at 96.376 kb on + strand at 96.376 kb on + strand at 96.376 kb on + strand at 96.377 kb on - strand at 96.377 kb on - strand at 96.377 kb on - strand at 96.377 kb on - strand at 96.377 kb on - strand at 96.377 kb on - strand at 96.377 kb on - strand at 96.377 kb on - strand at 96.377 kb on - strand at 96.377 kb on - strand at 96.377 kb on - strand at 96.377 kb on - strand at 96.377 kb on - strand at 96.377 kb on - strand at 96.377 kb on - strand at 96.377 kb on - strand at 96.377 kb on - strand at 96.377 kb on - strand at 96.377 kb on - strand at 96.377 kb on - strand at 96.377 kb on - strand at 96.377 kb on - strand at 96.377 kb on - strand at 96.377 kb on - strand at 96.377 kb on - strand at 96.378 kb on + strand at 96.378 kb on + strand at 96.378 kb on + strand at 96.378 kb on + strand at 96.378 kb on + strand at 96.378 kb on + strand at 96.379 kb on - strand at 96.379 kb on - strand at 96.433 kb on + strand at 96.477 kb on + strand at 96.531 kb on - strand at 96.531 kb on - strand at 96.601 kb on - strand, within AO353_00480 at 96.601 kb on - strand, within AO353_00480 at 96.612 kb on + strand, within AO353_00480 at 96.613 kb on - strand, within AO353_00480 at 96.658 kb on - strand, within AO353_00480 at 96.811 kb on + strand, within AO353_00480 at 96.812 kb on - strand, within AO353_00480 at 96.893 kb on + strand, within AO353_00480 at 96.893 kb on + strand, within AO353_00480 at 96.893 kb on + strand, within AO353_00480 at 96.894 kb on - strand at 96.894 kb on - strand, within AO353_00480 at 96.894 kb on - strand, within AO353_00480 at 96.894 kb on - strand, within AO353_00480 at 96.957 kb on - strand, within AO353_00480 at 96.957 kb on - strand, within AO353_00480 at 97.005 kb on + strand, within AO353_00480 at 97.006 kb on - strand, within AO353_00480 at 97.016 kb on + strand at 97.017 kb on - strand at 97.017 kb on - strand at 97.076 kb on + strand at 97.079 kb on + strand at 97.079 kb on + strand at 97.079 kb on + strand at 97.079 kb on + strand at 97.079 kb on + strand at 97.080 kb on - strand at 97.080 kb on - strand at 97.207 kb on - strand, within AO353_00485 at 97.252 kb on + strand, within AO353_00485 at 97.252 kb on + strand, within AO353_00485 at 97.253 kb on - strand, within AO353_00485 at 97.392 kb on + strand, within AO353_00485 at 97.393 kb on - strand, within AO353_00485 at 97.434 kb on + strand, within AO353_00485 at 97.435 kb on - strand, within AO353_00485 at 97.522 kb on - strand, within AO353_00485 at 97.539 kb on + strand, within AO353_00485 at 97.540 kb on - strand, within AO353_00485 at 97.540 kb on - strand, within AO353_00485 at 97.546 kb on + strand at 97.547 kb on - strand, within AO353_00485 at 97.612 kb on + strand, within AO353_00485 at 97.612 kb on + strand, within AO353_00485 at 97.613 kb on - strand, within AO353_00485 at 97.613 kb on - strand, within AO353_00485 at 97.613 kb on - strand, within AO353_00485 at 97.613 kb on - strand, within AO353_00485 at 97.616 kb on + strand, within AO353_00485 at 97.617 kb on - strand, within AO353_00485 at 97.617 kb on - strand, within AO353_00485 at 97.632 kb on - strand, within AO353_00485 at 97.632 kb on - strand, within AO353_00485 at 97.744 kb on + strand, within AO353_00485 at 97.744 kb on + strand, within AO353_00485 at 97.745 kb on - strand, within AO353_00485 at 97.745 kb on - strand, within AO353_00485 at 97.784 kb on + strand, within AO353_00485 at 97.785 kb on - strand, within AO353_00485 at 97.785 kb on - strand, within AO353_00485 at 97.785 kb on - strand, within AO353_00485 at 97.894 kb on + strand, within AO353_00485 at 97.895 kb on - strand, within AO353_00485 at 97.903 kb on + strand, within AO353_00485 at 97.904 kb on - strand, within AO353_00485 at 97.968 kb on + strand, within AO353_00485 at 97.971 kb on + strand, within AO353_00485 at 97.971 kb on + strand, within AO353_00485 at 97.972 kb on - strand, within AO353_00485 at 97.978 kb on + strand, within AO353_00485 at 97.979 kb on - strand, within AO353_00485 at 97.979 kb on - strand, within AO353_00485 at 98.010 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Doxycycline hyclate 0.0002 mg/ml remove 95,518 - +1.6 95,530 - +0.2 95,831 + AO353_00470 0.64 +0.4 95,831 + AO353_00470 0.64 -0.8 95,831 + AO353_00470 0.64 +0.8 95,831 + AO353_00470 0.64 +1.1 95,831 + AO353_00470 0.64 +0.7 95,831 + AO353_00470 0.64 +0.1 95,831 + AO353_00470 0.64 +0.8 95,831 + AO353_00470 0.64 +1.2 95,831 + AO353_00470 0.64 -1.2 95,832 - AO353_00470 0.64 +0.0 95,832 - AO353_00470 0.64 -2.0 95,832 - AO353_00470 0.64 -0.8 95,832 - AO353_00470 0.64 +0.4 95,906 + AO353_00470 0.79 +0.4 95,906 + AO353_00470 0.79 -1.6 95,906 + AO353_00470 0.79 -1.2 95,906 + AO353_00470 0.79 -0.2 95,906 + AO353_00470 0.79 -1.3 95,907 - AO353_00470 0.80 -0.8 95,907 - AO353_00470 0.80 -0.8 95,907 - AO353_00470 0.80 -2.2 95,907 - AO353_00470 0.80 +2.0 95,907 - AO353_00470 0.80 +0.2 95,907 - AO353_00470 0.80 -1.5 95,988 + +0.8 96,001 + +1.8 96,001 + +0.6 96,002 - -0.8 96,002 - +0.8 96,065 - +2.0 96,326 + +0.6 96,327 - -0.4 96,327 - -0.2 96,343 + +1.8 96,343 + +0.8 96,343 + +1.0 96,344 - +0.4 96,344 - -0.5 96,374 + +2.1 96,374 + -1.0 96,374 + -0.9 96,374 + +0.2 96,374 + -1.2 96,374 + +0.8 96,374 + -0.8 96,374 + +3.6 96,374 + +2.5 96,374 + -1.5 96,375 - +0.3 96,375 - -0.5 96,375 - +0.1 96,375 - -1.5 96,375 - +0.8 96,375 - +0.3 96,375 - +1.2 96,375 - +0.1 96,375 - +0.2 96,375 - +0.4 96,375 - -0.8 96,375 - -0.2 96,375 - +0.0 96,375 - -2.0 96,375 - -1.5 96,376 + -0.8 96,376 + -1.0 96,376 + -0.2 96,376 + +0.9 96,376 + -0.2 96,376 + +0.4 96,376 + -0.2 96,376 + +0.7 96,376 + -1.5 96,376 + +0.1 96,376 + -1.8 96,377 - +0.8 96,377 - +2.2 96,377 - -1.4 96,377 - +1.0 96,377 - +0.0 96,377 - +0.2 96,377 - +0.0 96,377 - -0.8 96,377 - -0.8 96,377 - -0.8 96,377 - +0.3 96,377 - -0.4 96,377 - +0.3 96,377 - +0.4 96,377 - -0.4 96,377 - -0.5 96,377 - -0.3 96,377 - +1.3 96,377 - -0.2 96,377 - +0.5 96,377 - -1.5 96,377 - -1.5 96,377 - -1.2 96,377 - +0.4 96,377 - -1.1 96,378 + -1.8 96,378 + +0.2 96,378 + +2.8 96,378 + +0.3 96,378 + +0.4 96,378 + -0.2 96,379 - -0.1 96,379 - +0.2 96,433 + -0.6 96,477 + -0.2 96,531 - +0.8 96,531 - -0.0 96,601 - AO353_00480 0.16 +1.4 96,601 - AO353_00480 0.16 -0.8 96,612 + AO353_00480 0.18 -1.3 96,613 - AO353_00480 0.18 -0.8 96,658 - AO353_00480 0.26 +0.2 96,811 + AO353_00480 0.53 +0.1 96,812 - AO353_00480 0.53 +0.1 96,893 + AO353_00480 0.68 +0.2 96,893 + AO353_00480 0.68 -0.2 96,893 + AO353_00480 0.68 -1.2 96,894 - -0.2 96,894 - AO353_00480 0.68 +2.4 96,894 - AO353_00480 0.68 +0.4 96,894 - AO353_00480 0.68 -0.8 96,957 - AO353_00480 0.79 -0.2 96,957 - AO353_00480 0.79 +1.1 97,005 + AO353_00480 0.88 -0.3 97,006 - AO353_00480 0.88 -0.4 97,016 + -2.4 97,017 - +0.9 97,017 - +0.5 97,076 + -2.6 97,079 + +0.8 97,079 + +4.4 97,079 + +0.5 97,079 + +0.2 97,079 + -2.2 97,080 - -0.2 97,080 - +2.0 97,207 - AO353_00485 0.13 -1.8 97,252 + AO353_00485 0.17 -2.2 97,252 + AO353_00485 0.17 +1.2 97,253 - AO353_00485 0.17 +0.5 97,392 + AO353_00485 0.31 -0.8 97,393 - AO353_00485 0.31 +0.6 97,434 + AO353_00485 0.35 -2.4 97,435 - AO353_00485 0.35 +1.1 97,522 - AO353_00485 0.43 +1.6 97,539 + AO353_00485 0.45 +0.8 97,540 - AO353_00485 0.45 +1.8 97,540 - AO353_00485 0.45 -0.8 97,546 + +0.8 97,547 - AO353_00485 0.46 -0.4 97,612 + AO353_00485 0.52 +0.0 97,612 + AO353_00485 0.52 +1.1 97,613 - AO353_00485 0.52 -0.3 97,613 - AO353_00485 0.52 +2.0 97,613 - AO353_00485 0.52 -0.2 97,613 - AO353_00485 0.52 +0.4 97,616 + AO353_00485 0.52 +1.4 97,617 - AO353_00485 0.52 -0.8 97,617 - AO353_00485 0.52 +0.2 97,632 - AO353_00485 0.54 +0.1 97,632 - AO353_00485 0.54 +1.4 97,744 + AO353_00485 0.65 -0.3 97,744 + AO353_00485 0.65 +0.2 97,745 - AO353_00485 0.65 -2.0 97,745 - AO353_00485 0.65 -0.2 97,784 + AO353_00485 0.69 +1.4 97,785 - AO353_00485 0.69 -1.5 97,785 - AO353_00485 0.69 -1.2 97,785 - AO353_00485 0.69 -0.1 97,894 + AO353_00485 0.79 +0.5 97,895 - AO353_00485 0.79 -2.0 97,903 + AO353_00485 0.80 +1.1 97,904 - AO353_00485 0.80 -1.9 97,968 + AO353_00485 0.86 +1.2 97,971 + AO353_00485 0.87 +0.8 97,971 + AO353_00485 0.87 -1.6 97,972 - AO353_00485 0.87 -1.9 97,978 + AO353_00485 0.87 -0.3 97,979 - AO353_00485 0.87 -1.2 97,979 - AO353_00485 0.87 +1.0 98,010 + -2.4
Or see this region's nucleotide sequence