Strain Fitness in Pseudomonas fluorescens FW300-N2E3 around AO353_00310

Experiment: Doxycycline hyclate 0.0002 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAO353_00305 and AO353_00310 are separated by 187 nucleotidesAO353_00310 and AO353_00315 are separated by 123 nucleotidesAO353_00315 and AO353_00320 overlap by 1 nucleotides AO353_00305: AO353_00305 - ATP-binding protein, at 54,932 to 56,923 _00305 AO353_00310: AO353_00310 - transaldolase, at 57,111 to 58,037 _00310 AO353_00315: AO353_00315 - anti-anti-sigma factor, at 58,161 to 58,643 _00315 AO353_00320: AO353_00320 - chemotaxis protein CheY, at 58,643 to 59,824 _00320 Position (kb) 57 58 59Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 56.144 kb on + strand, within AO353_00305at 56.144 kb on + strand, within AO353_00305at 56.144 kb on + strand, within AO353_00305at 56.144 kb on + strand, within AO353_00305at 56.144 kb on + strand, within AO353_00305at 56.144 kb on + strand, within AO353_00305at 56.144 kb on + strand, within AO353_00305at 56.144 kb on + strand, within AO353_00305at 56.144 kb on + strand, within AO353_00305at 56.144 kb on + strand, within AO353_00305at 56.144 kb on + strand, within AO353_00305at 56.144 kb on + strand, within AO353_00305at 56.144 kb on + strand, within AO353_00305at 56.145 kb on - strand, within AO353_00305at 56.145 kb on - strand, within AO353_00305at 56.145 kb on - strand, within AO353_00305at 56.145 kb on - strand, within AO353_00305at 56.145 kb on - strand, within AO353_00305at 56.145 kb on - strand, within AO353_00305at 56.145 kb on - strand, within AO353_00305at 56.145 kb on - strand, within AO353_00305at 56.145 kb on - strand, within AO353_00305at 56.145 kb on - strand, within AO353_00305at 56.145 kb on - strand, within AO353_00305at 56.145 kb on - strand, within AO353_00305at 56.145 kb on - strand, within AO353_00305at 56.153 kb on - strand, within AO353_00305at 56.153 kb on - strand, within AO353_00305at 56.241 kb on + strand, within AO353_00305at 56.242 kb on - strand, within AO353_00305at 56.242 kb on - strand, within AO353_00305at 56.242 kb on - strand, within AO353_00305at 56.307 kb on + strand, within AO353_00305at 56.307 kb on + strand, within AO353_00305at 56.308 kb on - strand, within AO353_00305at 56.315 kb on - strand, within AO353_00305at 56.328 kb on + strand, within AO353_00305at 56.328 kb on + strand, within AO353_00305at 56.328 kb on + strand, within AO353_00305at 56.328 kb on + strand, within AO353_00305at 56.329 kb on - strand, within AO353_00305at 56.329 kb on - strand, within AO353_00305at 56.329 kb on - strand, within AO353_00305at 56.329 kb on - strand, within AO353_00305at 56.329 kb on - strand, within AO353_00305at 56.332 kb on + strand, within AO353_00305at 56.332 kb on + strand, within AO353_00305at 56.332 kb on + strand, within AO353_00305at 56.332 kb on + strand, within AO353_00305at 56.332 kb on + strand, within AO353_00305at 56.332 kb on + strand, within AO353_00305at 56.332 kb on + strand, within AO353_00305at 56.333 kb on - strand, within AO353_00305at 56.333 kb on - strand, within AO353_00305at 56.333 kb on - strand, within AO353_00305at 56.333 kb on - strand, within AO353_00305at 56.333 kb on - strand, within AO353_00305at 56.333 kb on - strand, within AO353_00305at 56.333 kb on - strand, within AO353_00305at 56.333 kb on - strand, within AO353_00305at 56.333 kb on - strand, within AO353_00305at 56.333 kb on - strand, within AO353_00305at 56.333 kb on - strand, within AO353_00305at 56.340 kb on - strand, within AO353_00305at 56.340 kb on - strand, within AO353_00305at 56.356 kb on + strand, within AO353_00305at 56.357 kb on - strand, within AO353_00305at 56.379 kb on + strand, within AO353_00305at 56.379 kb on + strand, within AO353_00305at 56.380 kb on - strand, within AO353_00305at 56.650 kb on + strand, within AO353_00305at 56.651 kb on - strand, within AO353_00305at 56.764 kb on + strandat 56.765 kb on - strandat 56.822 kb on + strandat 56.822 kb on + strandat 56.822 kb on + strandat 56.822 kb on + strandat 56.822 kb on + strandat 56.822 kb on + strandat 56.823 kb on - strandat 56.823 kb on - strandat 56.823 kb on - strandat 56.823 kb on - strandat 56.823 kb on - strandat 56.823 kb on - strandat 56.824 kb on + strandat 56.824 kb on + strandat 56.824 kb on + strandat 56.825 kb on - strandat 56.898 kb on + strandat 56.898 kb on + strandat 56.898 kb on + strandat 56.899 kb on - strandat 56.899 kb on - strandat 56.926 kb on + strandat 56.926 kb on + strandat 56.926 kb on + strandat 56.926 kb on + strandat 56.927 kb on - strandat 56.956 kb on - strandat 56.956 kb on - strandat 56.956 kb on - strandat 56.973 kb on + strandat 56.973 kb on + strandat 56.973 kb on + strandat 56.973 kb on + strandat 56.973 kb on + strandat 56.974 kb on - strandat 56.974 kb on - strandat 56.974 kb on - strandat 56.977 kb on + strandat 56.977 kb on + strandat 56.978 kb on - strandat 57.039 kb on + strandat 57.039 kb on + strandat 57.099 kb on + strandat 57.151 kb on + strandat 57.152 kb on - strandat 57.252 kb on + strand, within AO353_00310at 57.253 kb on - strandat 57.366 kb on - strand, within AO353_00310at 57.366 kb on - strand, within AO353_00310at 57.366 kb on - strand, within AO353_00310at 57.445 kb on - strand, within AO353_00310at 57.540 kb on - strand, within AO353_00310at 57.636 kb on + strand, within AO353_00310at 57.636 kb on + strand, within AO353_00310at 57.636 kb on + strand, within AO353_00310at 57.637 kb on - strand, within AO353_00310at 57.637 kb on - strand, within AO353_00310at 57.637 kb on - strand, within AO353_00310at 57.637 kb on - strand, within AO353_00310at 57.645 kb on + strand, within AO353_00310at 57.645 kb on + strand, within AO353_00310at 57.645 kb on + strand, within AO353_00310at 57.645 kb on + strand, within AO353_00310at 57.669 kb on + strand, within AO353_00310at 57.669 kb on + strand, within AO353_00310at 57.669 kb on + strand, within AO353_00310at 57.670 kb on - strand, within AO353_00310at 57.670 kb on - strand, within AO353_00310at 57.714 kb on + strand, within AO353_00310at 57.714 kb on + strand, within AO353_00310at 57.714 kb on + strand, within AO353_00310at 57.715 kb on - strand, within AO353_00310at 57.715 kb on - strand, within AO353_00310at 57.715 kb on - strand, within AO353_00310at 57.715 kb on - strand, within AO353_00310at 57.715 kb on - strand, within AO353_00310at 57.720 kb on + strand, within AO353_00310at 57.720 kb on + strand, within AO353_00310at 57.720 kb on + strand, within AO353_00310at 57.720 kb on + strand, within AO353_00310at 57.720 kb on + strand, within AO353_00310at 57.721 kb on - strand, within AO353_00310at 57.721 kb on - strand, within AO353_00310at 57.721 kb on - strand, within AO353_00310at 57.723 kb on + strand, within AO353_00310at 57.723 kb on + strand, within AO353_00310at 57.723 kb on + strand, within AO353_00310at 57.723 kb on + strand, within AO353_00310at 57.724 kb on - strand, within AO353_00310at 57.724 kb on - strand, within AO353_00310at 57.724 kb on - strand, within AO353_00310at 57.724 kb on - strand, within AO353_00310at 57.724 kb on - strand, within AO353_00310at 57.724 kb on - strand, within AO353_00310at 57.738 kb on + strand, within AO353_00310at 57.738 kb on + strand, within AO353_00310at 57.738 kb on + strand, within AO353_00310at 57.738 kb on + strand, within AO353_00310at 57.739 kb on - strand, within AO353_00310at 57.739 kb on - strand, within AO353_00310at 57.739 kb on - strand, within AO353_00310at 57.739 kb on - strand, within AO353_00310at 57.739 kb on - strand, within AO353_00310at 57.978 kb on - strandat 57.978 kb on - strandat 57.978 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Doxycycline hyclate 0.0002 mg/ml
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56,144 + AO353_00305 0.61 -0.8
56,144 + AO353_00305 0.61 +1.0
56,144 + AO353_00305 0.61 +0.3
56,144 + AO353_00305 0.61 -1.2
56,144 + AO353_00305 0.61 +0.1
56,144 + AO353_00305 0.61 +1.6
56,144 + AO353_00305 0.61 -0.8
56,144 + AO353_00305 0.61 +1.1
56,144 + AO353_00305 0.61 -0.8
56,144 + AO353_00305 0.61 -0.2
56,144 + AO353_00305 0.61 +0.1
56,144 + AO353_00305 0.61 +0.8
56,144 + AO353_00305 0.61 +0.6
56,145 - AO353_00305 0.61 -1.2
56,145 - AO353_00305 0.61 -1.2
56,145 - AO353_00305 0.61 -0.8
56,145 - AO353_00305 0.61 -2.0
56,145 - AO353_00305 0.61 +0.1
56,145 - AO353_00305 0.61 -0.1
56,145 - AO353_00305 0.61 -0.6
56,145 - AO353_00305 0.61 +1.4
56,145 - AO353_00305 0.61 +1.0
56,145 - AO353_00305 0.61 -0.6
56,145 - AO353_00305 0.61 +0.0
56,145 - AO353_00305 0.61 -0.8
56,145 - AO353_00305 0.61 -2.0
56,153 - AO353_00305 0.61 -1.2
56,153 - AO353_00305 0.61 -0.2
56,241 + AO353_00305 0.66 +0.9
56,242 - AO353_00305 0.66 +0.8
56,242 - AO353_00305 0.66 -3.4
56,242 - AO353_00305 0.66 +1.0
56,307 + AO353_00305 0.69 +0.4
56,307 + AO353_00305 0.69 -1.5
56,308 - AO353_00305 0.69 +1.5
56,315 - AO353_00305 0.69 +0.6
56,328 + AO353_00305 0.70 +0.3
56,328 + AO353_00305 0.70 +0.7
56,328 + AO353_00305 0.70 -0.2
56,328 + AO353_00305 0.70 +0.2
56,329 - AO353_00305 0.70 -0.7
56,329 - AO353_00305 0.70 -0.4
56,329 - AO353_00305 0.70 -1.0
56,329 - AO353_00305 0.70 -1.2
56,329 - AO353_00305 0.70 -1.2
56,332 + AO353_00305 0.70 +0.5
56,332 + AO353_00305 0.70 +0.8
56,332 + AO353_00305 0.70 +1.2
56,332 + AO353_00305 0.70 +1.8
56,332 + AO353_00305 0.70 +1.5
56,332 + AO353_00305 0.70 -0.8
56,332 + AO353_00305 0.70 +0.8
56,333 - AO353_00305 0.70 +0.8
56,333 - AO353_00305 0.70 +1.4
56,333 - AO353_00305 0.70 +0.8
56,333 - AO353_00305 0.70 +2.1
56,333 - AO353_00305 0.70 +0.8
56,333 - AO353_00305 0.70 +0.3
56,333 - AO353_00305 0.70 +2.4
56,333 - AO353_00305 0.70 +0.2
56,333 - AO353_00305 0.70 +0.1
56,333 - AO353_00305 0.70 -0.4
56,333 - AO353_00305 0.70 -0.3
56,340 - AO353_00305 0.71 -1.8
56,340 - AO353_00305 0.71 +0.0
56,356 + AO353_00305 0.71 +0.8
56,357 - AO353_00305 0.72 -0.0
56,379 + AO353_00305 0.73 +2.0
56,379 + AO353_00305 0.73 +0.2
56,380 - AO353_00305 0.73 +0.1
56,650 + AO353_00305 0.86 -0.7
56,651 - AO353_00305 0.86 +0.5
56,764 + -0.2
56,765 - +0.4
56,822 + +0.5
56,822 + -1.5
56,822 + -0.7
56,822 + +0.8
56,822 + -0.4
56,822 + +1.4
56,823 - -0.1
56,823 - +3.0
56,823 - -0.6
56,823 - +1.2
56,823 - -1.4
56,823 - +1.2
56,824 + +0.5
56,824 + +0.2
56,824 + -2.6
56,825 - +0.8
56,898 + -2.5
56,898 + +1.0
56,898 + -0.6
56,899 - +0.8
56,899 - -0.4
56,926 + +0.1
56,926 + +0.8
56,926 + +0.7
56,926 + +0.8
56,927 - -0.3
56,956 - -0.8
56,956 - +0.2
56,956 - +0.4
56,973 + -0.3
56,973 + -0.2
56,973 + +1.4
56,973 + -0.5
56,973 + -0.5
56,974 - +0.5
56,974 - -0.2
56,974 - -0.2
56,977 + +2.1
56,977 + -2.2
56,978 - -0.2
57,039 + -0.2
57,039 + -2.4
57,099 + -0.8
57,151 + -1.2
57,152 - -1.2
57,252 + AO353_00310 0.15 -2.0
57,253 - -0.2
57,366 - AO353_00310 0.28 -1.1
57,366 - AO353_00310 0.28 +0.8
57,366 - AO353_00310 0.28 -0.5
57,445 - AO353_00310 0.36 -2.4
57,540 - AO353_00310 0.46 -1.2
57,636 + AO353_00310 0.57 +0.5
57,636 + AO353_00310 0.57 +2.2
57,636 + AO353_00310 0.57 +0.8
57,637 - AO353_00310 0.57 -1.8
57,637 - AO353_00310 0.57 -1.8
57,637 - AO353_00310 0.57 +0.2
57,637 - AO353_00310 0.57 -1.2
57,645 + AO353_00310 0.58 -1.8
57,645 + AO353_00310 0.58 -0.6
57,645 + AO353_00310 0.58 -0.9
57,645 + AO353_00310 0.58 -0.2
57,669 + AO353_00310 0.60 -0.4
57,669 + AO353_00310 0.60 -0.6
57,669 + AO353_00310 0.60 -0.2
57,670 - AO353_00310 0.60 -1.4
57,670 - AO353_00310 0.60 +0.4
57,714 + AO353_00310 0.65 -0.4
57,714 + AO353_00310 0.65 -0.9
57,714 + AO353_00310 0.65 -0.2
57,715 - AO353_00310 0.65 -0.5
57,715 - AO353_00310 0.65 -0.8
57,715 - AO353_00310 0.65 +2.8
57,715 - AO353_00310 0.65 -2.4
57,715 - AO353_00310 0.65 +0.5
57,720 + AO353_00310 0.66 -1.4
57,720 + AO353_00310 0.66 -0.2
57,720 + AO353_00310 0.66 -0.2
57,720 + AO353_00310 0.66 -0.2
57,720 + AO353_00310 0.66 -0.8
57,721 - AO353_00310 0.66 -0.2
57,721 - AO353_00310 0.66 -2.2
57,721 - AO353_00310 0.66 -1.2
57,723 + AO353_00310 0.66 -0.4
57,723 + AO353_00310 0.66 -1.8
57,723 + AO353_00310 0.66 +0.1
57,723 + AO353_00310 0.66 -0.3
57,724 - AO353_00310 0.66 -1.3
57,724 - AO353_00310 0.66 -1.8
57,724 - AO353_00310 0.66 -1.5
57,724 - AO353_00310 0.66 -0.8
57,724 - AO353_00310 0.66 -0.3
57,724 - AO353_00310 0.66 -1.6
57,738 + AO353_00310 0.68 -0.2
57,738 + AO353_00310 0.68 -0.2
57,738 + AO353_00310 0.68 -1.0
57,738 + AO353_00310 0.68 -0.8
57,739 - AO353_00310 0.68 -2.5
57,739 - AO353_00310 0.68 -0.8
57,739 - AO353_00310 0.68 -1.2
57,739 - AO353_00310 0.68 -2.5
57,739 - AO353_00310 0.68 -1.5
57,978 - -1.8
57,978 - -1.2
57,978 - +0.8

Or see this region's nucleotide sequence