Experiment: Doxycycline hyclate 0.0002 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt AO353_00170 and AO353_00175 overlap by 4 nucleotides AO353_00175 and AO353_00180 are separated by 68 nucleotides AO353_00180 and AO353_00185 overlap by 1 nucleotides AO353_00185 and AO353_00190 are separated by 6 nucleotides
AO353_00170: AO353_00170 - lysozyme, at 34,524 to 35,051
_00170
AO353_00175: AO353_00175 - hypothetical protein, at 35,048 to 35,302
_00175
AO353_00180: AO353_00180 - conjugal transfer protein TraR, at 35,371 to 35,580
_00180
AO353_00185: AO353_00185 - phage tail protein, at 35,580 to 36,032
_00185
AO353_00190: AO353_00190 - phage tail protein, at 36,039 to 37,154
_00190
Position (kb) 35
36
37 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2
3 at 34.586 kb on + strand, within AO353_00170 at 34.712 kb on + strand, within AO353_00170 at 34.861 kb on + strand, within AO353_00170 at 34.862 kb on - strand, within AO353_00170 at 34.862 kb on - strand, within AO353_00170 at 35.003 kb on + strand at 35.004 kb on - strand at 35.004 kb on - strand at 35.004 kb on - strand at 35.379 kb on + strand at 35.614 kb on + strand at 35.659 kb on + strand, within AO353_00185 at 35.849 kb on + strand, within AO353_00185 at 35.849 kb on + strand, within AO353_00185 at 35.850 kb on - strand, within AO353_00185 at 36.041 kb on - strand at 36.121 kb on + strand at 36.121 kb on + strand at 36.121 kb on + strand at 36.122 kb on - strand at 36.122 kb on - strand at 36.122 kb on - strand at 36.122 kb on - strand at 36.122 kb on - strand at 36.210 kb on - strand, within AO353_00190 at 36.321 kb on + strand, within AO353_00190 at 36.321 kb on + strand, within AO353_00190 at 36.421 kb on + strand, within AO353_00190 at 36.443 kb on - strand, within AO353_00190 at 36.443 kb on - strand, within AO353_00190 at 36.586 kb on - strand, within AO353_00190 at 36.704 kb on - strand, within AO353_00190 at 36.704 kb on - strand, within AO353_00190 at 36.704 kb on - strand, within AO353_00190 at 36.756 kb on + strand, within AO353_00190 at 36.756 kb on + strand, within AO353_00190 at 36.757 kb on - strand, within AO353_00190 at 36.769 kb on + strand, within AO353_00190 at 36.769 kb on + strand, within AO353_00190 at 36.769 kb on + strand, within AO353_00190 at 36.769 kb on + strand, within AO353_00190 at 36.770 kb on - strand, within AO353_00190 at 36.804 kb on - strand, within AO353_00190
Per-strain Table
Position Strand Gene LocusTag Fraction Doxycycline hyclate 0.0002 mg/ml remove 34,586 + AO353_00170 0.12 -0.2 34,712 + AO353_00170 0.36 -0.8 34,861 + AO353_00170 0.64 +0.3 34,862 - AO353_00170 0.64 -0.2 34,862 - AO353_00170 0.64 +1.8 35,003 + -0.6 35,004 - +0.4 35,004 - +0.7 35,004 - -1.2 35,379 + -3.9 35,614 + -0.0 35,659 + AO353_00185 0.17 -1.4 35,849 + AO353_00185 0.59 +0.5 35,849 + AO353_00185 0.59 +0.8 35,850 - AO353_00185 0.60 -1.7 36,041 - -2.8 36,121 + -1.1 36,121 + -0.2 36,121 + -1.2 36,122 - -1.8 36,122 - -1.2 36,122 - -2.0 36,122 - -0.8 36,122 - -0.2 36,210 - AO353_00190 0.15 -0.1 36,321 + AO353_00190 0.25 -0.4 36,321 + AO353_00190 0.25 -0.1 36,421 + AO353_00190 0.34 +0.5 36,443 - AO353_00190 0.36 +1.4 36,443 - AO353_00190 0.36 -1.0 36,586 - AO353_00190 0.49 +1.4 36,704 - AO353_00190 0.60 -0.2 36,704 - AO353_00190 0.60 -0.2 36,704 - AO353_00190 0.60 +0.5 36,756 + AO353_00190 0.64 +0.1 36,756 + AO353_00190 0.64 +3.1 36,757 - AO353_00190 0.64 +0.2 36,769 + AO353_00190 0.65 +0.2 36,769 + AO353_00190 0.65 +0.6 36,769 + AO353_00190 0.65 +0.8 36,769 + AO353_00190 0.65 +1.0 36,770 - AO353_00190 0.66 -0.2 36,804 - AO353_00190 0.69 -1.4
Or see this region's nucleotide sequence