Experiment: Cholin acetate 60 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shewana3_3754 and Shewana3_3755 are separated by 95 nucleotides Shewana3_3755 and Shewana3_3756 are separated by 68 nucleotides
Shewana3_3754: Shewana3_3754 - PepSY-associated TM helix domain-containing protein (RefSeq), at 4,511,660 to 4,512,739
_3754
Shewana3_3755: Shewana3_3755 - hypothetical protein (RefSeq), at 4,512,835 to 4,513,155
_3755
Shewana3_3756: Shewana3_3756 - glycerol kinase (RefSeq), at 4,513,224 to 4,514,708
_3756
Position (kb) 4512
4513
4514 Strain fitness (log2 ratio) -2
-1
0
1 at 4511.940 kb on + strand, within Shewana3_3754 at 4511.960 kb on + strand, within Shewana3_3754 at 4511.968 kb on - strand, within Shewana3_3754 at 4511.968 kb on - strand, within Shewana3_3754 at 4511.968 kb on - strand, within Shewana3_3754 at 4511.971 kb on + strand, within Shewana3_3754 at 4511.971 kb on + strand, within Shewana3_3754 at 4511.973 kb on + strand, within Shewana3_3754 at 4512.061 kb on + strand, within Shewana3_3754 at 4512.064 kb on - strand, within Shewana3_3754 at 4512.090 kb on - strand, within Shewana3_3754 at 4512.090 kb on - strand, within Shewana3_3754 at 4512.238 kb on - strand, within Shewana3_3754 at 4512.342 kb on - strand, within Shewana3_3754 at 4512.342 kb on - strand, within Shewana3_3754 at 4512.509 kb on - strand, within Shewana3_3754 at 4512.650 kb on + strand at 4512.755 kb on + strand at 4512.763 kb on - strand at 4512.806 kb on + strand at 4512.814 kb on - strand at 4512.849 kb on - strand at 4512.862 kb on + strand at 4512.915 kb on + strand, within Shewana3_3755 at 4512.980 kb on + strand, within Shewana3_3755 at 4512.980 kb on + strand, within Shewana3_3755 at 4513.184 kb on + strand at 4513.184 kb on + strand at 4513.184 kb on + strand at 4513.184 kb on + strand at 4513.184 kb on + strand at 4513.192 kb on - strand at 4513.192 kb on - strand at 4513.192 kb on - strand at 4513.192 kb on - strand at 4513.192 kb on - strand at 4513.392 kb on - strand, within Shewana3_3756 at 4513.498 kb on + strand, within Shewana3_3756 at 4513.508 kb on + strand, within Shewana3_3756 at 4513.551 kb on - strand, within Shewana3_3756 at 4513.588 kb on + strand, within Shewana3_3756 at 4513.774 kb on - strand, within Shewana3_3756 at 4513.842 kb on - strand, within Shewana3_3756 at 4513.884 kb on - strand, within Shewana3_3756 at 4513.945 kb on + strand, within Shewana3_3756 at 4513.953 kb on - strand, within Shewana3_3756 at 4514.052 kb on - strand, within Shewana3_3756 at 4514.088 kb on - strand, within Shewana3_3756 at 4514.102 kb on + strand, within Shewana3_3756
Per-strain Table
Position Strand Gene LocusTag Fraction Cholin acetate 60 mM remove 4,511,940 + Shewana3_3754 0.26 -0.4 4,511,960 + Shewana3_3754 0.28 +0.3 4,511,968 - Shewana3_3754 0.29 -0.5 4,511,968 - Shewana3_3754 0.29 -0.0 4,511,968 - Shewana3_3754 0.29 +0.4 4,511,971 + Shewana3_3754 0.29 -2.5 4,511,971 + Shewana3_3754 0.29 -1.7 4,511,973 + Shewana3_3754 0.29 -1.2 4,512,061 + Shewana3_3754 0.37 -0.4 4,512,064 - Shewana3_3754 0.37 -0.3 4,512,090 - Shewana3_3754 0.40 -0.8 4,512,090 - Shewana3_3754 0.40 -1.0 4,512,238 - Shewana3_3754 0.54 +0.0 4,512,342 - Shewana3_3754 0.63 +0.1 4,512,342 - Shewana3_3754 0.63 +0.3 4,512,509 - Shewana3_3754 0.79 -1.3 4,512,650 + +0.1 4,512,755 + +0.1 4,512,763 - +0.1 4,512,806 + -0.0 4,512,814 - -2.2 4,512,849 - -0.4 4,512,862 + +0.2 4,512,915 + Shewana3_3755 0.25 +0.0 4,512,980 + Shewana3_3755 0.45 +0.4 4,512,980 + Shewana3_3755 0.45 +0.2 4,513,184 + -1.3 4,513,184 + +0.3 4,513,184 + -1.7 4,513,184 + -0.7 4,513,184 + -1.2 4,513,192 - +0.4 4,513,192 - -1.5 4,513,192 - -0.3 4,513,192 - +1.3 4,513,192 - +0.5 4,513,392 - Shewana3_3756 0.11 +0.6 4,513,498 + Shewana3_3756 0.18 -1.7 4,513,508 + Shewana3_3756 0.19 -0.9 4,513,551 - Shewana3_3756 0.22 -1.2 4,513,588 + Shewana3_3756 0.25 +0.3 4,513,774 - Shewana3_3756 0.37 +0.1 4,513,842 - Shewana3_3756 0.42 -1.1 4,513,884 - Shewana3_3756 0.44 +0.4 4,513,945 + Shewana3_3756 0.49 +0.6 4,513,953 - Shewana3_3756 0.49 -1.2 4,514,052 - Shewana3_3756 0.56 +0.6 4,514,088 - Shewana3_3756 0.58 -1.1 4,514,102 + Shewana3_3756 0.59 +0.1
Or see this region's nucleotide sequence