Experiment: Cholin acetate 60 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shewana3_3273 and Shewana3_3274 are separated by 148 nucleotides Shewana3_3274 and Shewana3_3275 are separated by 28 nucleotides
Shewana3_3273: Shewana3_3273 - hypothetical protein (RefSeq), at 3,912,644 to 3,913,681
_3273
Shewana3_3274: Shewana3_3274 - cob(I)yrinic acid a,c-diamide adenosyltransferase (RefSeq), at 3,913,830 to 3,914,465
_3274
Shewana3_3275: Shewana3_3275 - cobyric acid synthase (RefSeq), at 3,914,494 to 3,916,119
_3275
Position (kb)
3913
3914
3915 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 3913.305 kb on - strand, within Shewana3_3273 at 3913.371 kb on - strand, within Shewana3_3273 at 3913.433 kb on + strand, within Shewana3_3273 at 3913.438 kb on + strand, within Shewana3_3273 at 3913.801 kb on + strand at 3913.828 kb on + strand at 3914.076 kb on - strand, within Shewana3_3274 at 3914.153 kb on - strand, within Shewana3_3274 at 3914.206 kb on + strand, within Shewana3_3274 at 3914.426 kb on - strand at 3914.643 kb on + strand at 3914.651 kb on - strand at 3914.651 kb on - strand at 3915.019 kb on - strand, within Shewana3_3275 at 3915.029 kb on - strand, within Shewana3_3275 at 3915.029 kb on - strand, within Shewana3_3275 at 3915.165 kb on - strand, within Shewana3_3275 at 3915.204 kb on + strand, within Shewana3_3275 at 3915.212 kb on - strand, within Shewana3_3275 at 3915.212 kb on - strand, within Shewana3_3275 at 3915.357 kb on - strand, within Shewana3_3275
Per-strain Table
Position Strand Gene LocusTag Fraction Cholin acetate 60 mM remove 3,913,305 - Shewana3_3273 0.64 +1.9 3,913,371 - Shewana3_3273 0.70 -0.1 3,913,433 + Shewana3_3273 0.76 -1.1 3,913,438 + Shewana3_3273 0.76 -0.7 3,913,801 + -0.2 3,913,828 + -0.8 3,914,076 - Shewana3_3274 0.39 +1.0 3,914,153 - Shewana3_3274 0.51 +0.0 3,914,206 + Shewana3_3274 0.59 -2.7 3,914,426 - +0.1 3,914,643 + -1.2 3,914,651 - -1.1 3,914,651 - -0.1 3,915,019 - Shewana3_3275 0.32 -0.1 3,915,029 - Shewana3_3275 0.33 -0.1 3,915,029 - Shewana3_3275 0.33 +1.6 3,915,165 - Shewana3_3275 0.41 +0.3 3,915,204 + Shewana3_3275 0.44 -0.3 3,915,212 - Shewana3_3275 0.44 +0.1 3,915,212 - Shewana3_3275 0.44 +0.1 3,915,357 - Shewana3_3275 0.53 +0.2
Or see this region's nucleotide sequence