Strain Fitness in Shewanella sp. ANA-3 around Shewana3_3249

Experiment: Cholin acetate 60 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntShewana3_3247 and Shewana3_3248 are separated by 2 nucleotidesShewana3_3248 and Shewana3_3249 are separated by 150 nucleotidesShewana3_3249 and Shewana3_3250 are separated by 19 nucleotidesShewana3_3250 and Shewana3_3251 are separated by 197 nucleotides Shewana3_3247: Shewana3_3247 - extracellular solute-binding protein (RefSeq), at 3,890,234 to 3,891,091 _3247 Shewana3_3248: Shewana3_3248 - UspA domain-containing protein (RefSeq), at 3,891,094 to 3,891,543 _3248 Shewana3_3249: Shewana3_3249 - UspA domain-containing protein (RefSeq), at 3,891,694 to 3,892,125 _3249 Shewana3_3250: Shewana3_3250 - hypothetical protein (RefSeq), at 3,892,145 to 3,892,543 _3250 Shewana3_3251: Shewana3_3251 - aldehyde dehydrogenase (RefSeq), at 3,892,741 to 3,894,165 _3251 Position (kb) 3891 3892 3893Strain fitness (log2 ratio) -1 0 1 2at 3890.951 kb on - strand, within Shewana3_3247at 3891.051 kb on - strandat 3891.068 kb on + strandat 3891.358 kb on + strand, within Shewana3_3248at 3891.365 kb on + strand, within Shewana3_3248at 3891.677 kb on + strandat 3891.805 kb on + strand, within Shewana3_3249at 3891.869 kb on - strand, within Shewana3_3249at 3891.935 kb on + strand, within Shewana3_3249at 3892.159 kb on + strandat 3892.159 kb on + strandat 3892.182 kb on + strandat 3892.597 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Cholin acetate 60 mM
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3,890,951 - Shewana3_3247 0.84 -1.0
3,891,051 - -0.1
3,891,068 + -0.5
3,891,358 + Shewana3_3248 0.59 -0.2
3,891,365 + Shewana3_3248 0.60 -1.1
3,891,677 + -0.6
3,891,805 + Shewana3_3249 0.26 +0.3
3,891,869 - Shewana3_3249 0.41 -1.2
3,891,935 + Shewana3_3249 0.56 +0.3
3,892,159 + +1.9
3,892,159 + +1.5
3,892,182 + +0.0
3,892,597 - +0.3

Or see this region's nucleotide sequence