Strain Fitness in Shewanella sp. ANA-3 around Shewana3_2358

Experiment: Cholin acetate 60 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntShewana3_2356 and Shewana3_2357 are separated by 9 nucleotidesShewana3_2357 and Shewana3_2358 are separated by 155 nucleotidesShewana3_2358 and Shewana3_2359 are separated by 78 nucleotidesShewana3_2359 and Shewana3_2360 are separated by 77 nucleotidesShewana3_2360 and Shewana3_2361 overlap by 13 nucleotides Shewana3_2356: Shewana3_2356 - phage integrase family protein (RefSeq), at 2,835,885 to 2,837,063 _2356 Shewana3_2357: Shewana3_2357 - hypothetical protein (RefSeq), at 2,837,073 to 2,837,285 _2357 Shewana3_2358: Shewana3_2358 - hypothetical protein (RefSeq), at 2,837,441 to 2,837,677 _2358 Shewana3_2359: Shewana3_2359 - transposase IS3/IS911 family protein (RefSeq), at 2,837,756 to 2,838,001 _2359 Shewana3_2360: Shewana3_2360 - IS3 family transposase (RefSeq), at 2,838,079 to 2,838,426 _2360 Shewana3_2361: Shewana3_2361 - integrase catalytic subunit (RefSeq), at 2,838,414 to 2,838,917 _2361 Position (kb) 2837 2838Strain fitness (log2 ratio) -1 0 1 2at 2836.689 kb on - strand, within Shewana3_2356at 2836.986 kb on + strandat 2837.069 kb on - strandat 2837.134 kb on - strand, within Shewana3_2357at 2837.207 kb on + strand, within Shewana3_2357at 2837.259 kb on + strand, within Shewana3_2357at 2837.754 kb on - strandat 2837.874 kb on + strand, within Shewana3_2359at 2837.936 kb on - strand, within Shewana3_2359at 2838.104 kb on + strandat 2838.429 kb on + strandat 2838.588 kb on + strand, within Shewana3_2361at 2838.664 kb on + strand, within Shewana3_2361

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Per-strain Table

Position Strand Gene LocusTag Fraction Cholin acetate 60 mM
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2,836,689 - Shewana3_2356 0.68 +0.3
2,836,986 + -0.7
2,837,069 - +0.1
2,837,134 - Shewana3_2357 0.29 -0.4
2,837,207 + Shewana3_2357 0.63 +0.3
2,837,259 + Shewana3_2357 0.87 -0.7
2,837,754 - +0.3
2,837,874 + Shewana3_2359 0.48 -0.7
2,837,936 - Shewana3_2359 0.73 +2.1
2,838,104 + -0.7
2,838,429 + -0.4
2,838,588 + Shewana3_2361 0.35 +0.3
2,838,664 + Shewana3_2361 0.50 +1.9

Or see this region's nucleotide sequence