Experiment: Cholin acetate 60 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shewana3_0834 and Shewana3_0835 are separated by 130 nucleotides Shewana3_0835 and Shewana3_0836 are separated by 75 nucleotides Shewana3_0836 and Shewana3_0837 are separated by 88 nucleotides
Shewana3_0834: Shewana3_0834 - hypothetical protein (RefSeq), at 966,913 to 967,872
_0834
Shewana3_0835: Shewana3_0835 - LysR family transcriptional regulator (RefSeq), at 968,003 to 968,986
_0835
Shewana3_0836: Shewana3_0836 - lysine exporter protein LysE/YggA (RefSeq), at 969,062 to 969,685
_0836
Shewana3_0837: Shewana3_0837 - NAD-dependent epimerase/dehydratase (RefSeq), at 969,774 to 970,709
_0837
Position (kb) 968
969 Strain fitness (log2 ratio) -1
0
1 at 967.064 kb on - strand, within Shewana3_0834 at 967.289 kb on + strand, within Shewana3_0834 at 967.297 kb on - strand, within Shewana3_0834 at 967.381 kb on + strand, within Shewana3_0834 at 967.389 kb on - strand, within Shewana3_0834 at 967.389 kb on - strand, within Shewana3_0834 at 967.393 kb on + strand, within Shewana3_0834 at 967.480 kb on - strand, within Shewana3_0834 at 967.634 kb on - strand, within Shewana3_0834 at 967.646 kb on + strand, within Shewana3_0834 at 967.646 kb on + strand, within Shewana3_0834 at 967.646 kb on + strand, within Shewana3_0834 at 967.654 kb on - strand, within Shewana3_0834 at 967.749 kb on + strand, within Shewana3_0834 at 967.757 kb on - strand, within Shewana3_0834 at 967.781 kb on + strand at 968.067 kb on + strand at 968.196 kb on - strand, within Shewana3_0835 at 968.237 kb on - strand, within Shewana3_0835 at 968.258 kb on + strand, within Shewana3_0835 at 968.313 kb on + strand, within Shewana3_0835 at 968.401 kb on + strand, within Shewana3_0835 at 968.409 kb on - strand, within Shewana3_0835 at 968.578 kb on - strand, within Shewana3_0835 at 968.744 kb on + strand, within Shewana3_0835 at 968.752 kb on - strand, within Shewana3_0835 at 968.867 kb on + strand, within Shewana3_0835 at 968.986 kb on + strand at 969.010 kb on + strand at 969.018 kb on - strand at 969.172 kb on - strand, within Shewana3_0836 at 969.188 kb on + strand, within Shewana3_0836 at 969.230 kb on - strand, within Shewana3_0836 at 969.266 kb on + strand, within Shewana3_0836 at 969.266 kb on + strand, within Shewana3_0836 at 969.279 kb on + strand, within Shewana3_0836 at 969.355 kb on + strand, within Shewana3_0836 at 969.441 kb on - strand, within Shewana3_0836 at 969.521 kb on + strand, within Shewana3_0836 at 969.943 kb on + strand, within Shewana3_0837 at 969.968 kb on + strand, within Shewana3_0837
Per-strain Table
Position Strand Gene LocusTag Fraction Cholin acetate 60 mM remove 967,064 - Shewana3_0834 0.16 -0.0 967,289 + Shewana3_0834 0.39 +0.7 967,297 - Shewana3_0834 0.40 -1.1 967,381 + Shewana3_0834 0.49 -0.3 967,389 - Shewana3_0834 0.50 -0.2 967,389 - Shewana3_0834 0.50 +0.4 967,393 + Shewana3_0834 0.50 +0.1 967,480 - Shewana3_0834 0.59 -1.0 967,634 - Shewana3_0834 0.75 +0.1 967,646 + Shewana3_0834 0.76 +0.1 967,646 + Shewana3_0834 0.76 -0.1 967,646 + Shewana3_0834 0.76 +0.5 967,654 - Shewana3_0834 0.77 -0.5 967,749 + Shewana3_0834 0.87 -0.5 967,757 - Shewana3_0834 0.88 -0.4 967,781 + -0.1 968,067 + +0.2 968,196 - Shewana3_0835 0.20 +0.6 968,237 - Shewana3_0835 0.24 -1.7 968,258 + Shewana3_0835 0.26 -0.5 968,313 + Shewana3_0835 0.32 -0.6 968,401 + Shewana3_0835 0.40 -0.3 968,409 - Shewana3_0835 0.41 -0.7 968,578 - Shewana3_0835 0.58 -1.6 968,744 + Shewana3_0835 0.75 -1.0 968,752 - Shewana3_0835 0.76 +1.1 968,867 + Shewana3_0835 0.88 -1.2 968,986 + +0.2 969,010 + -0.5 969,018 - +0.1 969,172 - Shewana3_0836 0.18 +0.3 969,188 + Shewana3_0836 0.20 +0.1 969,230 - Shewana3_0836 0.27 +0.3 969,266 + Shewana3_0836 0.33 -0.7 969,266 + Shewana3_0836 0.33 +0.3 969,279 + Shewana3_0836 0.35 -1.1 969,355 + Shewana3_0836 0.47 +0.0 969,441 - Shewana3_0836 0.61 -0.5 969,521 + Shewana3_0836 0.74 +0.0 969,943 + Shewana3_0837 0.18 -0.4 969,968 + Shewana3_0837 0.21 -0.4
Or see this region's nucleotide sequence