Experiment: Cholin acetate 60 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shewana3_0447 and Shewana3_0448 are separated by 52 nucleotides Shewana3_0448 and Shewana3_0449 are separated by 219 nucleotides
Shewana3_0447: Shewana3_0447 - response regulator receiver protein (RefSeq), at 521,588 to 523,207
_0447
Shewana3_0448: Shewana3_0448 - major facilitator transporter (RefSeq), at 523,260 to 524,432
_0448
Shewana3_0449: Shewana3_0449 - diguanylate cyclase with GAF sensor (RefSeq), at 524,652 to 525,695
_0449
Position (kb) 523
524
525 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 522.320 kb on + strand, within Shewana3_0447 at 522.342 kb on - strand, within Shewana3_0447 at 522.343 kb on - strand, within Shewana3_0447 at 522.458 kb on + strand, within Shewana3_0447 at 522.469 kb on + strand, within Shewana3_0447 at 522.477 kb on - strand, within Shewana3_0447 at 522.531 kb on - strand, within Shewana3_0447 at 522.547 kb on - strand, within Shewana3_0447 at 522.745 kb on - strand, within Shewana3_0447 at 523.184 kb on + strand at 523.467 kb on + strand, within Shewana3_0448 at 523.509 kb on - strand, within Shewana3_0448 at 523.532 kb on + strand, within Shewana3_0448 at 523.661 kb on + strand, within Shewana3_0448 at 523.667 kb on - strand, within Shewana3_0448 at 523.667 kb on - strand, within Shewana3_0448 at 523.747 kb on + strand, within Shewana3_0448 at 523.815 kb on - strand, within Shewana3_0448 at 524.485 kb on + strand at 524.485 kb on + strand at 524.493 kb on - strand at 524.497 kb on + strand at 524.507 kb on + strand at 524.549 kb on - strand at 524.658 kb on - strand at 524.665 kb on + strand at 524.673 kb on - strand at 524.785 kb on - strand, within Shewana3_0449 at 524.789 kb on + strand, within Shewana3_0449 at 524.789 kb on + strand, within Shewana3_0449 at 524.797 kb on - strand, within Shewana3_0449 at 524.797 kb on - strand, within Shewana3_0449 at 524.833 kb on - strand, within Shewana3_0449 at 524.951 kb on - strand, within Shewana3_0449 at 525.085 kb on + strand, within Shewana3_0449 at 525.271 kb on + strand, within Shewana3_0449 at 525.327 kb on + strand, within Shewana3_0449 at 525.368 kb on - strand, within Shewana3_0449 at 525.393 kb on + strand, within Shewana3_0449 at 525.425 kb on + strand, within Shewana3_0449
Per-strain Table
Position Strand Gene LocusTag Fraction Cholin acetate 60 mM remove 522,320 + Shewana3_0447 0.45 -1.6 522,342 - Shewana3_0447 0.47 -1.0 522,343 - Shewana3_0447 0.47 -0.4 522,458 + Shewana3_0447 0.54 +0.3 522,469 + Shewana3_0447 0.54 +0.1 522,477 - Shewana3_0447 0.55 +0.7 522,531 - Shewana3_0447 0.58 +0.6 522,547 - Shewana3_0447 0.59 +0.0 522,745 - Shewana3_0447 0.71 -0.7 523,184 + +0.1 523,467 + Shewana3_0448 0.18 -1.0 523,509 - Shewana3_0448 0.21 -0.9 523,532 + Shewana3_0448 0.23 -1.1 523,661 + Shewana3_0448 0.34 -2.9 523,667 - Shewana3_0448 0.35 -1.0 523,667 - Shewana3_0448 0.35 -1.2 523,747 + Shewana3_0448 0.42 -0.9 523,815 - Shewana3_0448 0.47 -0.8 524,485 + -1.5 524,485 + -1.7 524,493 - -0.5 524,497 + -2.2 524,507 + -1.2 524,549 - -1.7 524,658 - -0.3 524,665 + -0.9 524,673 - -0.5 524,785 - Shewana3_0449 0.13 +0.8 524,789 + Shewana3_0449 0.13 +0.0 524,789 + Shewana3_0449 0.13 -1.7 524,797 - Shewana3_0449 0.14 +0.1 524,797 - Shewana3_0449 0.14 +0.2 524,833 - Shewana3_0449 0.17 -0.2 524,951 - Shewana3_0449 0.29 +0.2 525,085 + Shewana3_0449 0.41 -0.1 525,271 + Shewana3_0449 0.59 +0.0 525,327 + Shewana3_0449 0.65 -0.9 525,368 - Shewana3_0449 0.69 -0.3 525,393 + Shewana3_0449 0.71 -1.2 525,425 + Shewana3_0449 0.74 +0.3
Or see this region's nucleotide sequence