Experiment: Cholin acetate 60 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shewana3_4288 and Shewana3_4289 are separated by 115 nucleotides Shewana3_4289 and Shewana3_4290 are separated by 14 nucleotides Shewana3_4290 and Shewana3_4291 are separated by 75 nucleotides Shewana3_4291 and Shewana3_4292 are separated by 188 nucleotides
Shewana3_4288: Shewana3_4288 - copper resistance B precursor (RefSeq), at 172,099 to 172,812
_4288
Shewana3_4289: Shewana3_4289 - copper resistance protein CopC (RefSeq), at 172,928 to 173,350
_4289
Shewana3_4290: Shewana3_4290 - copper resistance D domain-containing protein (RefSeq), at 173,365 to 174,261
_4290
Shewana3_4291: Shewana3_4291 - putative orphan protein (RefSeq), at 174,337 to 174,780
_4291
Shewana3_4292: Shewana3_4292 - hypothetical protein (RefSeq), at 174,969 to 175,514
_4292
Position (kb) 173
174
175 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 172.515 kb on - strand, within Shewana3_4288 at 172.515 kb on - strand, within Shewana3_4288 at 172.620 kb on + strand, within Shewana3_4288 at 172.652 kb on + strand, within Shewana3_4288 at 172.696 kb on - strand, within Shewana3_4288 at 172.832 kb on + strand at 172.832 kb on + strand at 172.832 kb on + strand at 172.840 kb on - strand at 172.840 kb on - strand at 172.966 kb on + strand at 173.007 kb on + strand, within Shewana3_4289 at 173.007 kb on + strand, within Shewana3_4289 at 173.007 kb on + strand, within Shewana3_4289 at 173.010 kb on - strand, within Shewana3_4289 at 173.015 kb on - strand, within Shewana3_4289 at 173.015 kb on - strand, within Shewana3_4289 at 173.015 kb on - strand, within Shewana3_4289 at 173.060 kb on - strand, within Shewana3_4289 at 173.072 kb on + strand, within Shewana3_4289 at 173.122 kb on - strand, within Shewana3_4289 at 173.191 kb on - strand, within Shewana3_4289 at 173.279 kb on + strand, within Shewana3_4289 at 173.327 kb on + strand at 173.417 kb on + strand at 173.463 kb on + strand, within Shewana3_4290 at 173.570 kb on - strand, within Shewana3_4290 at 173.675 kb on + strand, within Shewana3_4290 at 173.763 kb on + strand, within Shewana3_4290 at 173.833 kb on - strand, within Shewana3_4290 at 173.870 kb on - strand, within Shewana3_4290 at 173.976 kb on + strand, within Shewana3_4290 at 173.995 kb on + strand, within Shewana3_4290 at 174.022 kb on + strand, within Shewana3_4290 at 174.030 kb on - strand, within Shewana3_4290 at 174.064 kb on - strand, within Shewana3_4290 at 174.092 kb on + strand, within Shewana3_4290 at 174.141 kb on + strand, within Shewana3_4290 at 174.208 kb on - strand at 174.331 kb on + strand at 174.344 kb on - strand at 174.346 kb on + strand at 174.346 kb on + strand at 174.346 kb on + strand at 174.354 kb on - strand at 174.429 kb on + strand, within Shewana3_4291 at 174.485 kb on - strand, within Shewana3_4291 at 174.540 kb on - strand, within Shewana3_4291 at 174.577 kb on + strand, within Shewana3_4291 at 174.595 kb on + strand, within Shewana3_4291 at 174.595 kb on + strand, within Shewana3_4291 at 174.603 kb on - strand, within Shewana3_4291 at 174.603 kb on - strand, within Shewana3_4291 at 174.665 kb on + strand, within Shewana3_4291 at 174.681 kb on + strand, within Shewana3_4291 at 174.703 kb on - strand, within Shewana3_4291 at 174.719 kb on + strand, within Shewana3_4291 at 174.719 kb on + strand, within Shewana3_4291 at 174.727 kb on - strand, within Shewana3_4291 at 174.781 kb on - strand at 174.858 kb on + strand at 174.876 kb on - strand at 174.931 kb on + strand at 174.985 kb on - strand at 175.005 kb on - strand at 175.025 kb on - strand, within Shewana3_4292 at 175.025 kb on - strand, within Shewana3_4292 at 175.027 kb on + strand, within Shewana3_4292 at 175.115 kb on + strand, within Shewana3_4292 at 175.161 kb on - strand, within Shewana3_4292 at 175.168 kb on + strand at 175.212 kb on + strand, within Shewana3_4292 at 175.230 kb on - strand, within Shewana3_4292 at 175.252 kb on + strand, within Shewana3_4292 at 175.252 kb on + strand, within Shewana3_4292 at 175.252 kb on + strand, within Shewana3_4292 at 175.252 kb on + strand, within Shewana3_4292 at 175.260 kb on - strand, within Shewana3_4292
Per-strain Table
Position Strand Gene LocusTag Fraction Cholin acetate 60 mM remove 172,515 - Shewana3_4288 0.58 -0.3 172,515 - Shewana3_4288 0.58 -1.3 172,620 + Shewana3_4288 0.73 +0.1 172,652 + Shewana3_4288 0.77 -1.1 172,696 - Shewana3_4288 0.84 -0.3 172,832 + +0.1 172,832 + +0.0 172,832 + -0.2 172,840 - +2.7 172,840 - +0.4 172,966 + -0.3 173,007 + Shewana3_4289 0.19 -0.9 173,007 + Shewana3_4289 0.19 +0.8 173,007 + Shewana3_4289 0.19 -0.9 173,010 - Shewana3_4289 0.19 +0.4 173,015 - Shewana3_4289 0.21 +0.8 173,015 - Shewana3_4289 0.21 +0.4 173,015 - Shewana3_4289 0.21 -1.2 173,060 - Shewana3_4289 0.31 +0.4 173,072 + Shewana3_4289 0.34 -1.2 173,122 - Shewana3_4289 0.46 +0.4 173,191 - Shewana3_4289 0.62 +0.4 173,279 + Shewana3_4289 0.83 +0.1 173,327 + -1.0 173,417 + +0.0 173,463 + Shewana3_4290 0.11 -1.0 173,570 - Shewana3_4290 0.23 +1.4 173,675 + Shewana3_4290 0.35 -0.5 173,763 + Shewana3_4290 0.44 -1.4 173,833 - Shewana3_4290 0.52 +0.4 173,870 - Shewana3_4290 0.56 +0.4 173,976 + Shewana3_4290 0.68 -1.3 173,995 + Shewana3_4290 0.70 -3.3 174,022 + Shewana3_4290 0.73 -1.4 174,030 - Shewana3_4290 0.74 +0.4 174,064 - Shewana3_4290 0.78 -1.6 174,092 + Shewana3_4290 0.81 +0.8 174,141 + Shewana3_4290 0.87 -1.3 174,208 - +0.4 174,331 + -0.3 174,344 - +2.0 174,346 + -0.6 174,346 + +0.5 174,346 + -0.1 174,354 - -0.6 174,429 + Shewana3_4291 0.21 -0.8 174,485 - Shewana3_4291 0.33 +1.0 174,540 - Shewana3_4291 0.46 +0.4 174,577 + Shewana3_4291 0.54 -1.2 174,595 + Shewana3_4291 0.58 +0.2 174,595 + Shewana3_4291 0.58 +0.3 174,603 - Shewana3_4291 0.60 +0.4 174,603 - Shewana3_4291 0.60 +0.4 174,665 + Shewana3_4291 0.74 -0.9 174,681 + Shewana3_4291 0.77 +0.0 174,703 - Shewana3_4291 0.82 -1.6 174,719 + Shewana3_4291 0.86 +0.5 174,719 + Shewana3_4291 0.86 -1.2 174,727 - Shewana3_4291 0.88 -0.2 174,781 - +0.4 174,858 + +1.0 174,876 - -1.2 174,931 + +0.4 174,985 - -0.7 175,005 - -0.2 175,025 - Shewana3_4292 0.10 -1.2 175,025 - Shewana3_4292 0.10 +0.3 175,027 + Shewana3_4292 0.11 +0.4 175,115 + Shewana3_4292 0.27 +1.1 175,161 - Shewana3_4292 0.35 -0.3 175,168 + +0.4 175,212 + Shewana3_4292 0.45 -1.2 175,230 - Shewana3_4292 0.48 +0.0 175,252 + Shewana3_4292 0.52 -1.2 175,252 + Shewana3_4292 0.52 -0.6 175,252 + Shewana3_4292 0.52 -1.6 175,252 + Shewana3_4292 0.52 -1.2 175,260 - Shewana3_4292 0.53 -0.5
Or see this region's nucleotide sequence