Experiment: MoYLS4 with Antimycin A 1uM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt DVU0220 and DVU0221 are separated by 9 nucleotides DVU0221 and DVU0222 are separated by 11 nucleotides DVU0222 and DVU0223 are separated by 99 nucleotides DVU0223 and DVU0224 are separated by 43 nucleotides
DVU0220: DVU0220 - tail fiber protein, putative (TIGR), at 259,739 to 260,755
DVU0220
DVU0221: DVU0221 - tail fiber assembly protein, putative (TIGR), at 260,765 to 261,208
DVU0221
DVU0222: DVU0222 - hypothetical protein (TIGR), at 261,220 to 261,549
DVU0222
DVU0223: DVU0223 - conserved hypothetical protein (TIGR), at 261,649 to 261,831
DVU0223
DVU0224: DVU0224 - conserved hypothetical protein (TIGR), at 261,875 to 262,270
DVU0224
Position (kb) 260
261
262 Strain fitness (log2 ratio) -2
-1
0
1 at 259.845 kb on - strand, within DVU0220 at 259.845 kb on - strand, within DVU0220 at 260.035 kb on - strand, within DVU0220 at 260.088 kb on - strand, within DVU0220 at 260.152 kb on - strand, within DVU0220 at 260.189 kb on - strand, within DVU0220 at 260.234 kb on + strand, within DVU0220 at 260.234 kb on + strand, within DVU0220 at 260.237 kb on - strand, within DVU0220 at 260.242 kb on - strand, within DVU0220 at 260.270 kb on + strand, within DVU0220 at 260.360 kb on - strand, within DVU0220 at 260.360 kb on - strand, within DVU0220 at 260.374 kb on - strand, within DVU0220 at 260.440 kb on - strand, within DVU0220 at 260.445 kb on - strand, within DVU0220 at 260.563 kb on + strand, within DVU0220 at 260.584 kb on + strand, within DVU0220 at 260.592 kb on - strand, within DVU0220 at 260.620 kb on + strand, within DVU0220 at 260.662 kb on - strand at 260.677 kb on - strand at 260.730 kb on - strand at 260.779 kb on + strand at 260.787 kb on - strand at 260.802 kb on - strand at 260.817 kb on + strand, within DVU0221 at 260.817 kb on + strand, within DVU0221 at 260.857 kb on + strand, within DVU0221 at 260.863 kb on - strand, within DVU0221 at 260.890 kb on - strand, within DVU0221 at 260.910 kb on + strand, within DVU0221 at 260.910 kb on + strand, within DVU0221 at 260.910 kb on + strand, within DVU0221 at 260.918 kb on - strand, within DVU0221 at 260.920 kb on + strand, within DVU0221 at 260.926 kb on + strand, within DVU0221 at 261.068 kb on - strand, within DVU0221 at 261.100 kb on - strand, within DVU0221 at 261.137 kb on - strand, within DVU0221 at 261.165 kb on + strand at 261.173 kb on - strand at 261.196 kb on - strand at 261.232 kb on + strand at 261.232 kb on + strand at 261.240 kb on - strand at 261.506 kb on + strand, within DVU0222 at 261.522 kb on + strand at 261.530 kb on - strand at 261.535 kb on - strand at 261.553 kb on - strand at 261.591 kb on - strand at 261.683 kb on + strand, within DVU0223 at 261.787 kb on + strand, within DVU0223
Per-strain Table
Position Strand Gene LocusTag Fraction MoYLS4 with Antimycin A 1uM remove 259,845 - DVU0220 0.10 -1.1 259,845 - DVU0220 0.10 +0.1 260,035 - DVU0220 0.29 -0.2 260,088 - DVU0220 0.34 -0.5 260,152 - DVU0220 0.41 +0.2 260,189 - DVU0220 0.44 -0.3 260,234 + DVU0220 0.49 -0.2 260,234 + DVU0220 0.49 -0.7 260,237 - DVU0220 0.49 -0.2 260,242 - DVU0220 0.49 +0.3 260,270 + DVU0220 0.52 -1.3 260,360 - DVU0220 0.61 -0.2 260,360 - DVU0220 0.61 -1.0 260,374 - DVU0220 0.62 -0.7 260,440 - DVU0220 0.69 +0.1 260,445 - DVU0220 0.69 -1.2 260,563 + DVU0220 0.81 +0.8 260,584 + DVU0220 0.83 -1.1 260,592 - DVU0220 0.84 +0.3 260,620 + DVU0220 0.87 +0.2 260,662 - +0.4 260,677 - -0.2 260,730 - +0.0 260,779 + +1.5 260,787 - -0.1 260,802 - +1.4 260,817 + DVU0221 0.12 -0.1 260,817 + DVU0221 0.12 -0.2 260,857 + DVU0221 0.21 -0.3 260,863 - DVU0221 0.22 +0.7 260,890 - DVU0221 0.28 -1.6 260,910 + DVU0221 0.33 -1.0 260,910 + DVU0221 0.33 +0.6 260,910 + DVU0221 0.33 +0.3 260,918 - DVU0221 0.34 -0.7 260,920 + DVU0221 0.35 -0.5 260,926 + DVU0221 0.36 +0.1 261,068 - DVU0221 0.68 -1.2 261,100 - DVU0221 0.75 +0.1 261,137 - DVU0221 0.84 +0.3 261,165 + -0.6 261,173 - +0.2 261,196 - -0.4 261,232 + -0.4 261,232 + -0.1 261,240 - +0.6 261,506 + DVU0222 0.87 -2.2 261,522 + -0.3 261,530 - -0.3 261,535 - -0.6 261,553 - +1.0 261,591 - +0.7 261,683 + DVU0223 0.19 -0.1 261,787 + DVU0223 0.75 +0.7
Or see this region's nucleotide sequence