Strain Fitness in Synechococcus elongatus PCC 7942 around Synpcc7942_1746

Experiment: Doxycycline hyclate 0.0015625 mg/ml

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Doxycycline hyclate 0.0015625 mg/ml
1,815,847	+				-2.4
1,815,857	+				-2.1
1,815,864	+				+0.6
1,815,864	+				+0.9
1,815,865	-				+0.4
1,815,865	-				-0.1
1,815,867	-				-0.4
1,815,867	-				+1.8
1,815,872	-				+1.1
1,815,900	+				+0.1
1,815,915	+		Synpcc7942_1745	0.12	+0.7
1,815,928	+		Synpcc7942_1745	0.15	+0.5
1,815,931	-		Synpcc7942_1745	0.15	-0.5
1,815,936	-		Synpcc7942_1745	0.16	-0.1
1,815,946	-		Synpcc7942_1745	0.18	+0.2
1,815,946	-		Synpcc7942_1745	0.18	-2.7
1,815,957	+		Synpcc7942_1745	0.20	-1.9
1,816,005	-		Synpcc7942_1745	0.29	+0.4
1,816,015	+		Synpcc7942_1745	0.31	+0.5
1,816,018	+		Synpcc7942_1745	0.31	+1.8
1,816,066	+		Synpcc7942_1745	0.40	-0.6
1,816,074	+		Synpcc7942_1745	0.41	-0.7
1,816,089	+		Synpcc7942_1745	0.44	+1.5
1,816,089	-		Synpcc7942_1745	0.44	-0.1
1,816,089	-		Synpcc7942_1745	0.44	+1.0
1,816,123	-		Synpcc7942_1745	0.50	-2.3
1,816,160	+		Synpcc7942_1745	0.57	+0.6
1,816,193	+		Synpcc7942_1745	0.63	+0.4
1,816,195	-		Synpcc7942_1745	0.64	+1.9
1,816,216	-		Synpcc7942_1745	0.67	+0.4
1,816,311	+		Synpcc7942_1745	0.85	+0.6
1,816,321	+		Synpcc7942_1745	0.87	+0.3
1,816,354	-				-1.2
1,816,436	-				-1.1
1,816,526	+				-1.3
1,816,534	-				-0.4
1,816,573	+				-0.2
1,816,599	-				+0.6
1,816,656	-				-0.6
1,816,735	-	rpoD2	Synpcc7942_1746	0.14	-1.1
1,816,745	+	rpoD2	Synpcc7942_1746	0.15	-1.4
1,816,745	-	rpoD2	Synpcc7942_1746	0.15	-2.1
1,816,841	-	rpoD2	Synpcc7942_1746	0.25	-0.7
1,816,925	-	rpoD2	Synpcc7942_1746	0.34	-2.1
1,816,969	+	rpoD2	Synpcc7942_1746	0.38	-3.7
1,817,113	+	rpoD2	Synpcc7942_1746	0.53	-2.3
1,817,113	+	rpoD2	Synpcc7942_1746	0.53	+0.0
1,817,113	+	rpoD2	Synpcc7942_1746	0.53	-2.4
1,817,113	+	rpoD2	Synpcc7942_1746	0.53	+0.5
1,817,113	+	rpoD2	Synpcc7942_1746	0.53	-1.7
1,817,121	-	rpoD2	Synpcc7942_1746	0.54	+0.3
1,817,121	-	rpoD2	Synpcc7942_1746	0.54	-0.7
1,817,121	-	rpoD2	Synpcc7942_1746	0.54	-2.0
1,817,121	-	rpoD2	Synpcc7942_1746	0.54	+0.9
1,817,148	-	rpoD2	Synpcc7942_1746	0.57	-1.4
1,817,163	-	rpoD2	Synpcc7942_1746	0.58	-1.7
1,817,170	-	rpoD2	Synpcc7942_1746	0.59	-3.1
1,817,252	-	rpoD2	Synpcc7942_1746	0.68	-3.4
1,817,322	+	rpoD2	Synpcc7942_1746	0.75	-0.8
1,817,373	+	rpoD2	Synpcc7942_1746	0.80	-1.1
1,817,388	+	rpoD2	Synpcc7942_1746	0.82	-2.4
1,817,395	-	rpoD2	Synpcc7942_1746	0.83	-1.1
1,817,396	-	rpoD2	Synpcc7942_1746	0.83	-2.4
1,817,396	-	rpoD2	Synpcc7942_1746	0.83	-1.4
1,817,472	-				-0.9
1,817,478	-				-1.1
1,817,514	+				-0.9
1,817,519	+				-1.1
1,817,522	-				-2.7
1,817,524	+				-0.9
1,817,524	+				-0.6
1,817,532	-				-1.0
1,817,539	+				+0.0
1,817,539	+				-2.0
1,817,539	+				-0.8
1,817,539	+				-2.0
1,817,539	+				+1.2
1,817,547	-				-1.7
1,817,547	-				-1.1
1,817,547	-				+0.0
1,817,547	-				-2.5
1,817,547	-				-0.5
1,817,620	-				-1.7
1,817,680	+				+1.0
1,817,704	+				-0.5
1,817,712	-				+0.5
1,817,727	+				+0.2
1,817,809	-				-0.0
1,817,867	+				-1.2
1,817,874	+				+0.1
1,817,899	+		Synpcc7942_1747	0.10	+0.5
1,817,909	+		Synpcc7942_1747	0.11	-1.4
1,817,909	+		Synpcc7942_1747	0.11	+0.5
1,817,914	+		Synpcc7942_1747	0.11	-1.7
1,817,915	-		Synpcc7942_1747	0.12	-0.1
1,817,917	-		Synpcc7942_1747	0.12	-0.1
1,817,917	-		Synpcc7942_1747	0.12	+2.7
1,818,056	-		Synpcc7942_1747	0.23	+1.5
1,818,056	-		Synpcc7942_1747	0.23	+1.1
1,818,058	-		Synpcc7942_1747	0.24	+0.2
1,818,058	-		Synpcc7942_1747	0.24	-0.1
1,818,058	-		Synpcc7942_1747	0.24	-1.1
1,818,058	-		Synpcc7942_1747	0.24	-3.8
1,818,071	+		Synpcc7942_1747	0.25	-0.1
1,818,073	+		Synpcc7942_1747	0.25	+0.9
1,818,073	+		Synpcc7942_1747	0.25	+1.2
1,818,090	+		Synpcc7942_1747	0.26	-1.6
1,818,096	+		Synpcc7942_1747	0.27	-1.1
1,818,098	-		Synpcc7942_1747	0.27	-2.7
1,818,101	+		Synpcc7942_1747	0.27	+0.5
1,818,101	+		Synpcc7942_1747	0.27	+0.6
1,818,118	+		Synpcc7942_1747	0.29	-0.0
1,818,129	+		Synpcc7942_1747	0.30	-0.7
1,818,155	-		Synpcc7942_1747	0.32	+1.7
1,818,186	-		Synpcc7942_1747	0.34	-1.5
1,818,212	-		Synpcc7942_1747	0.37	-0.1
1,818,220	+		Synpcc7942_1747	0.37	-0.7
1,818,227	+		Synpcc7942_1747	0.38	+0.1
1,818,228	+		Synpcc7942_1747	0.38	-1.7
1,818,234	+		Synpcc7942_1747	0.38	+0.6
1,818,250	+		Synpcc7942_1747	0.40	+1.0
1,818,279	-		Synpcc7942_1747	0.42	-1.0
1,818,287	-		Synpcc7942_1747	0.43	+0.6
1,818,319	+		Synpcc7942_1747	0.46	-0.1
1,818,319	+		Synpcc7942_1747	0.46	+0.3
1,818,319	+		Synpcc7942_1747	0.46	+1.3
1,818,319	+		Synpcc7942_1747	0.46	-1.0
1,818,319	+		Synpcc7942_1747	0.46	+0.2
1,818,319	+		Synpcc7942_1747	0.46	-0.1
1,818,319	+		Synpcc7942_1747	0.46	-0.1
1,818,327	-		Synpcc7942_1747	0.46	+2.9
1,818,327	-		Synpcc7942_1747	0.46	+0.5
1,818,327	-		Synpcc7942_1747	0.46	-0.5
1,818,327	-		Synpcc7942_1747	0.46	-0.9
1,818,328	+		Synpcc7942_1747	0.46	-1.5
1,818,338	+		Synpcc7942_1747	0.47	+0.7
1,818,360	-		Synpcc7942_1747	0.49	+0.1
1,818,368	+		Synpcc7942_1747	0.50	+0.7
1,818,370	-		Synpcc7942_1747	0.50	+0.2
1,818,410	+		Synpcc7942_1747	0.53	+2.6
1,818,423	-		Synpcc7942_1747	0.54	+0.5
1,818,423	-		Synpcc7942_1747	0.54	-0.1
1,818,435	+		Synpcc7942_1747	0.55	+0.5
1,818,516	+		Synpcc7942_1747	0.62	-0.1
1,818,526	+		Synpcc7942_1747	0.63	-0.6
1,818,545	+		Synpcc7942_1747	0.65	+0.7
1,818,559	+		Synpcc7942_1747	0.66	+1.5