Strain Fitness in Synechococcus elongatus PCC 7942 around Synpcc7942_0817

Experiment: Doxycycline hyclate 0.0015625 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntSynpcc7942_0816 and Synpcc7942_0817 are separated by 104 nucleotidesSynpcc7942_0817 and purS are separated by 231 nucleotidespurS and purL overlap by 4 nucleotides Synpcc7942_0816: Synpcc7942_0816 - diguanylate cyclase/phosphodiesterase, at 810,181 to 812,226 _0816 Synpcc7942_0817: Synpcc7942_0817 - putative ferric uptake regulator, FUR family, at 812,331 to 812,723 _0817 Synpcc7942_0818: purS - phosphoribosylformylglycinamidine synthase subunit PurS, at 812,955 to 813,224 purS Synpcc7942_0819: purL - phosphoribosylformylglycinamidine synthase subunit I, at 813,221 to 813,886 purL Position (kb) 812 813Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2 3at 811.361 kb on + strand, within Synpcc7942_0816at 811.387 kb on - strand, within Synpcc7942_0816at 811.397 kb on + strandat 811.421 kb on - strandat 811.440 kb on - strand, within Synpcc7942_0816at 811.445 kb on - strand, within Synpcc7942_0816at 811.622 kb on + strand, within Synpcc7942_0816at 811.644 kb on - strand, within Synpcc7942_0816at 811.650 kb on - strand, within Synpcc7942_0816at 811.670 kb on + strand, within Synpcc7942_0816at 811.702 kb on - strand, within Synpcc7942_0816at 811.702 kb on - strand, within Synpcc7942_0816at 811.702 kb on - strand, within Synpcc7942_0816at 811.758 kb on - strand, within Synpcc7942_0816at 811.865 kb on + strand, within Synpcc7942_0816at 811.871 kb on + strand, within Synpcc7942_0816at 811.873 kb on - strand, within Synpcc7942_0816at 812.156 kb on + strandat 812.217 kb on - strandat 812.227 kb on + strandat 812.375 kb on + strand, within Synpcc7942_0817at 812.383 kb on - strand, within Synpcc7942_0817at 812.409 kb on + strand, within Synpcc7942_0817at 812.420 kb on + strand, within Synpcc7942_0817at 812.433 kb on + strand, within Synpcc7942_0817at 812.433 kb on + strand, within Synpcc7942_0817at 812.438 kb on + strand, within Synpcc7942_0817at 812.441 kb on - strand, within Synpcc7942_0817at 812.441 kb on - strand, within Synpcc7942_0817at 812.473 kb on - strand, within Synpcc7942_0817at 812.475 kb on - strand, within Synpcc7942_0817at 812.508 kb on + strand, within Synpcc7942_0817at 812.515 kb on + strand, within Synpcc7942_0817at 812.515 kb on + strand, within Synpcc7942_0817at 812.515 kb on + strand, within Synpcc7942_0817at 812.523 kb on - strand, within Synpcc7942_0817at 812.523 kb on - strand, within Synpcc7942_0817at 812.523 kb on - strand, within Synpcc7942_0817at 812.528 kb on - strand, within Synpcc7942_0817at 812.558 kb on + strand, within Synpcc7942_0817at 812.566 kb on - strand, within Synpcc7942_0817at 812.568 kb on + strand, within Synpcc7942_0817at 812.594 kb on - strand, within Synpcc7942_0817at 812.605 kb on + strand, within Synpcc7942_0817at 812.621 kb on - strand, within Synpcc7942_0817at 812.621 kb on - strand, within Synpcc7942_0817at 812.621 kb on - strand, within Synpcc7942_0817at 812.638 kb on - strand, within Synpcc7942_0817at 812.643 kb on - strand, within Synpcc7942_0817at 812.645 kb on - strand, within Synpcc7942_0817at 812.651 kb on - strand, within Synpcc7942_0817at 812.661 kb on - strand, within Synpcc7942_0817at 812.663 kb on + strand, within Synpcc7942_0817at 812.673 kb on + strand, within Synpcc7942_0817at 812.673 kb on + strand, within Synpcc7942_0817at 812.681 kb on - strand, within Synpcc7942_0817at 812.718 kb on + strandat 812.718 kb on + strandat 812.718 kb on + strandat 812.725 kb on + strandat 812.727 kb on - strandat 812.731 kb on + strandat 812.744 kb on + strandat 812.745 kb on + strandat 812.745 kb on + strandat 812.759 kb on - strandat 812.774 kb on - strandat 812.778 kb on + strandat 812.779 kb on + strandat 812.793 kb on - strandat 812.793 kb on - strandat 812.838 kb on + strandat 812.846 kb on + strandat 812.851 kb on + strandat 812.854 kb on - strandat 812.873 kb on - strandat 812.893 kb on + strandat 812.904 kb on - strandat 813.219 kb on - strandat 813.219 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Doxycycline hyclate 0.0015625 mg/ml
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811,361 + Synpcc7942_0816 0.58 +0.7
811,387 - Synpcc7942_0816 0.59 -0.6
811,397 + +0.8
811,421 - -0.8
811,440 - Synpcc7942_0816 0.62 +1.6
811,445 - Synpcc7942_0816 0.62 +0.3
811,622 + Synpcc7942_0816 0.70 +1.3
811,644 - Synpcc7942_0816 0.72 -2.2
811,650 - Synpcc7942_0816 0.72 -0.5
811,670 + Synpcc7942_0816 0.73 -1.3
811,702 - Synpcc7942_0816 0.74 -0.4
811,702 - Synpcc7942_0816 0.74 -1.4
811,702 - Synpcc7942_0816 0.74 +0.8
811,758 - Synpcc7942_0816 0.77 +0.6
811,865 + Synpcc7942_0816 0.82 -2.8
811,871 + Synpcc7942_0816 0.83 +0.2
811,873 - Synpcc7942_0816 0.83 +2.0
812,156 + +0.8
812,217 - +2.8
812,227 + -1.4
812,375 + Synpcc7942_0817 0.11 -2.1
812,383 - Synpcc7942_0817 0.13 -0.2
812,409 + Synpcc7942_0817 0.20 -0.8
812,420 + Synpcc7942_0817 0.23 -4.1
812,433 + Synpcc7942_0817 0.26 -2.6
812,433 + Synpcc7942_0817 0.26 -2.5
812,438 + Synpcc7942_0817 0.27 -4.4
812,441 - Synpcc7942_0817 0.28 +0.2
812,441 - Synpcc7942_0817 0.28 -0.9
812,473 - Synpcc7942_0817 0.36 -0.4
812,475 - Synpcc7942_0817 0.37 -1.3
812,508 + Synpcc7942_0817 0.45 -0.9
812,515 + Synpcc7942_0817 0.47 -2.5
812,515 + Synpcc7942_0817 0.47 -2.4
812,515 + Synpcc7942_0817 0.47 -0.7
812,523 - Synpcc7942_0817 0.49 -4.4
812,523 - Synpcc7942_0817 0.49 -0.2
812,523 - Synpcc7942_0817 0.49 -0.7
812,528 - Synpcc7942_0817 0.50 -3.2
812,558 + Synpcc7942_0817 0.58 -2.1
812,566 - Synpcc7942_0817 0.60 -1.2
812,568 + Synpcc7942_0817 0.60 -1.8
812,594 - Synpcc7942_0817 0.67 -0.8
812,605 + Synpcc7942_0817 0.70 -3.5
812,621 - Synpcc7942_0817 0.74 -0.2
812,621 - Synpcc7942_0817 0.74 -0.2
812,621 - Synpcc7942_0817 0.74 -1.5
812,638 - Synpcc7942_0817 0.78 -1.2
812,643 - Synpcc7942_0817 0.79 -1.0
812,645 - Synpcc7942_0817 0.80 -3.4
812,651 - Synpcc7942_0817 0.81 -1.8
812,661 - Synpcc7942_0817 0.84 -1.2
812,663 + Synpcc7942_0817 0.84 -1.2
812,673 + Synpcc7942_0817 0.87 -0.9
812,673 + Synpcc7942_0817 0.87 -2.2
812,681 - Synpcc7942_0817 0.89 -1.4
812,718 + +0.1
812,718 + +1.0
812,718 + -0.1
812,725 + +1.1
812,727 - -1.0
812,731 + -0.6
812,744 + -2.5
812,745 + -0.5
812,745 + -1.1
812,759 - -3.0
812,774 - -4.0
812,778 + +0.5
812,779 + -1.4
812,793 - -0.4
812,793 - +0.4
812,838 + -0.2
812,846 + +0.4
812,851 + +0.1
812,854 - -0.0
812,873 - +0.4
812,893 + -0.2
812,904 - -3.0
813,219 - -0.0
813,219 - -0.2

Or see this region's nucleotide sequence