Experiment: Doxycycline hyclate 0.0015625 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Synpcc7942_0386 and Synpcc7942_0387 are separated by 4 nucleotides Synpcc7942_0387 and rfaG overlap by 32 nucleotides rfaG and Synpcc7942_0389 are separated by 89 nucleotides Synpcc7942_0389 and chrA overlap by 30 nucleotides
Synpcc7942_0386: Synpcc7942_0386 - hypothetical protein, at 378,981 to 380,390
_0386
Synpcc7942_0387: Synpcc7942_0387 - hypothetical protein, at 380,395 to 380,901
_0387
Synpcc7942_0388: rfaG - probable glycosyltransferase, at 380,870 to 381,991
rfaG
Synpcc7942_0389: Synpcc7942_0389 - hypothetical protein, at 382,081 to 382,332
_0389
Synpcc7942_0390: chrA - Chromate transporter, at 382,303 to 383,454
chrA
Position (kb) 380
381
382 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2
3 at 380.368 kb on + strand at 380.838 kb on + strand at 380.849 kb on + strand, within Synpcc7942_0387 at 380.857 kb on - strand at 380.859 kb on - strand at 380.868 kb on + strand at 380.868 kb on + strand at 380.868 kb on + strand at 380.868 kb on + strand at 380.868 kb on + strand at 380.868 kb on + strand at 380.868 kb on + strand at 380.868 kb on + strand at 380.868 kb on + strand at 380.871 kb on - strand at 380.876 kb on - strand at 380.876 kb on - strand at 380.876 kb on - strand at 380.876 kb on - strand at 380.876 kb on - strand at 380.876 kb on - strand at 380.876 kb on - strand at 380.876 kb on - strand at 381.058 kb on - strand, within rfaG at 381.127 kb on + strand, within rfaG at 381.127 kb on + strand, within rfaG at 381.225 kb on + strand, within rfaG at 381.398 kb on - strand, within rfaG at 381.477 kb on - strand, within rfaG at 381.478 kb on - strand, within rfaG at 381.541 kb on - strand, within rfaG at 381.806 kb on - strand, within rfaG at 381.827 kb on + strand, within rfaG at 381.931 kb on + strand at 381.941 kb on + strand at 381.942 kb on + strand at 381.959 kb on + strand at 381.972 kb on + strand at 382.016 kb on - strand at 382.016 kb on - strand at 382.065 kb on + strand at 382.065 kb on + strand at 382.065 kb on + strand at 382.073 kb on - strand at 382.073 kb on - strand at 382.075 kb on + strand at 382.083 kb on - strand at 382.083 kb on - strand at 382.090 kb on + strand at 382.090 kb on + strand at 382.092 kb on + strand at 382.095 kb on + strand at 382.100 kb on - strand at 382.100 kb on - strand at 382.100 kb on - strand at 382.117 kb on + strand, within Synpcc7942_0389 at 382.122 kb on + strand, within Synpcc7942_0389 at 382.130 kb on - strand, within Synpcc7942_0389 at 382.143 kb on - strand, within Synpcc7942_0389 at 382.152 kb on - strand, within Synpcc7942_0389 at 382.202 kb on + strand, within Synpcc7942_0389 at 382.214 kb on + strand, within Synpcc7942_0389 at 382.241 kb on + strand, within Synpcc7942_0389 at 382.249 kb on - strand, within Synpcc7942_0389 at 382.257 kb on + strand, within Synpcc7942_0389 at 382.265 kb on - strand, within Synpcc7942_0389 at 382.300 kb on + strand, within Synpcc7942_0389 at 382.301 kb on + strand, within Synpcc7942_0389 at 382.301 kb on + strand, within Synpcc7942_0389 at 382.301 kb on + strand, within Synpcc7942_0389 at 382.301 kb on + strand, within Synpcc7942_0389 at 382.301 kb on + strand, within Synpcc7942_0389 at 382.302 kb on + strand, within Synpcc7942_0389 at 382.309 kb on - strand at 382.309 kb on - strand at 382.309 kb on - strand at 382.309 kb on - strand at 382.309 kb on - strand at 382.309 kb on - strand at 382.309 kb on - strand at 382.309 kb on - strand at 382.316 kb on - strand at 382.316 kb on - strand at 382.327 kb on + strand at 382.327 kb on + strand at 382.327 kb on + strand at 382.327 kb on + strand at 382.328 kb on - strand at 382.335 kb on - strand at 382.335 kb on - strand at 382.337 kb on + strand at 382.342 kb on + strand at 382.361 kb on - strand at 382.400 kb on + strand at 382.408 kb on - strand at 382.446 kb on + strand, within chrA at 382.462 kb on - strand, within chrA at 382.474 kb on - strand, within chrA at 382.474 kb on - strand, within chrA at 382.492 kb on + strand, within chrA at 382.492 kb on + strand, within chrA at 382.492 kb on + strand, within chrA at 382.497 kb on + strand, within chrA at 382.497 kb on + strand, within chrA at 382.497 kb on + strand, within chrA at 382.497 kb on + strand, within chrA at 382.510 kb on - strand, within chrA at 382.511 kb on - strand, within chrA at 382.529 kb on + strand, within chrA at 382.537 kb on - strand, within chrA at 382.565 kb on - strand, within chrA at 382.566 kb on - strand, within chrA at 382.617 kb on + strand, within chrA at 382.627 kb on + strand, within chrA at 382.627 kb on + strand, within chrA at 382.627 kb on + strand, within chrA at 382.627 kb on + strand, within chrA at 382.635 kb on - strand, within chrA at 382.677 kb on + strand at 382.682 kb on + strand, within chrA at 382.687 kb on + strand, within chrA at 382.690 kb on - strand, within chrA at 382.701 kb on + strand, within chrA at 382.741 kb on + strand, within chrA at 382.743 kb on + strand, within chrA at 382.751 kb on + strand, within chrA at 382.759 kb on - strand, within chrA at 382.772 kb on - strand, within chrA at 382.783 kb on + strand, within chrA at 382.794 kb on + strand, within chrA at 382.850 kb on - strand, within chrA at 382.850 kb on - strand, within chrA at 382.928 kb on + strand, within chrA at 382.928 kb on + strand, within chrA at 382.928 kb on + strand, within chrA
Per-strain Table
Position Strand Gene LocusTag Fraction Doxycycline hyclate 0.0015625 mg/ml remove 380,368 + +0.2 380,838 + +1.9 380,849 + Synpcc7942_0387 0.90 -0.4 380,857 - -1.1 380,859 - +1.9 380,868 + +1.1 380,868 + -1.7 380,868 + -1.7 380,868 + -1.2 380,868 + -0.9 380,868 + +1.1 380,868 + -1.1 380,868 + +2.6 380,868 + -0.5 380,871 - -1.3 380,876 - +0.2 380,876 - +0.3 380,876 - -0.6 380,876 - -2.2 380,876 - +0.9 380,876 - +0.3 380,876 - +1.7 380,876 - +0.8 381,058 - rfaG Synpcc7942_0388 0.17 -1.7 381,127 + rfaG Synpcc7942_0388 0.23 -2.7 381,127 + rfaG Synpcc7942_0388 0.23 -1.7 381,225 + rfaG Synpcc7942_0388 0.32 -3.7 381,398 - rfaG Synpcc7942_0388 0.47 -1.1 381,477 - rfaG Synpcc7942_0388 0.54 -1.1 381,478 - rfaG Synpcc7942_0388 0.54 -0.1 381,541 - rfaG Synpcc7942_0388 0.60 -1.7 381,806 - rfaG Synpcc7942_0388 0.83 -4.0 381,827 + rfaG Synpcc7942_0388 0.85 -0.7 381,931 + -0.1 381,941 + -1.6 381,942 + -1.0 381,959 + -0.9 381,972 + +0.6 382,016 - -0.3 382,016 - +0.5 382,065 + +1.5 382,065 + -0.0 382,065 + +1.3 382,073 - +1.6 382,073 - +0.9 382,075 + +1.6 382,083 - +0.1 382,083 - -0.9 382,090 + +0.9 382,090 + +0.6 382,092 + -2.9 382,095 + -2.1 382,100 - -2.7 382,100 - -0.1 382,100 - +2.2 382,117 + Synpcc7942_0389 0.14 +0.0 382,122 + Synpcc7942_0389 0.16 -1.8 382,130 - Synpcc7942_0389 0.19 -1.0 382,143 - Synpcc7942_0389 0.25 -0.7 382,152 - Synpcc7942_0389 0.28 +0.3 382,202 + Synpcc7942_0389 0.48 +0.9 382,214 + Synpcc7942_0389 0.53 +0.9 382,241 + Synpcc7942_0389 0.63 +0.2 382,249 - Synpcc7942_0389 0.67 +1.2 382,257 + Synpcc7942_0389 0.70 -1.4 382,265 - Synpcc7942_0389 0.73 -2.1 382,300 + Synpcc7942_0389 0.87 -2.4 382,301 + Synpcc7942_0389 0.87 -0.1 382,301 + Synpcc7942_0389 0.87 +1.6 382,301 + Synpcc7942_0389 0.87 +0.1 382,301 + Synpcc7942_0389 0.87 -2.7 382,301 + Synpcc7942_0389 0.87 -0.4 382,302 + Synpcc7942_0389 0.88 +1.0 382,309 - +0.5 382,309 - -0.1 382,309 - +1.2 382,309 - +0.0 382,309 - +0.5 382,309 - -0.9 382,309 - +0.9 382,309 - +0.3 382,316 - +0.9 382,316 - +1.0 382,327 + -1.2 382,327 + -0.1 382,327 + +1.0 382,327 + -0.4 382,328 - -0.1 382,335 - -0.1 382,335 - -0.1 382,337 + +1.9 382,342 + -0.5 382,361 - +1.1 382,400 + +0.4 382,408 - -1.1 382,446 + chrA Synpcc7942_0390 0.12 +0.5 382,462 - chrA Synpcc7942_0390 0.14 +0.9 382,474 - chrA Synpcc7942_0390 0.15 -0.1 382,474 - chrA Synpcc7942_0390 0.15 -2.1 382,492 + chrA Synpcc7942_0390 0.16 -0.7 382,492 + chrA Synpcc7942_0390 0.16 +0.5 382,492 + chrA Synpcc7942_0390 0.16 -0.5 382,497 + chrA Synpcc7942_0390 0.17 -0.7 382,497 + chrA Synpcc7942_0390 0.17 +1.3 382,497 + chrA Synpcc7942_0390 0.17 -1.1 382,497 + chrA Synpcc7942_0390 0.17 +0.6 382,510 - chrA Synpcc7942_0390 0.18 -0.1 382,511 - chrA Synpcc7942_0390 0.18 +0.4 382,529 + chrA Synpcc7942_0390 0.20 -0.5 382,537 - chrA Synpcc7942_0390 0.20 -0.3 382,565 - chrA Synpcc7942_0390 0.23 +0.8 382,566 - chrA Synpcc7942_0390 0.23 +0.2 382,617 + chrA Synpcc7942_0390 0.27 +2.9 382,627 + chrA Synpcc7942_0390 0.28 -2.1 382,627 + chrA Synpcc7942_0390 0.28 +0.1 382,627 + chrA Synpcc7942_0390 0.28 +0.9 382,627 + chrA Synpcc7942_0390 0.28 -0.5 382,635 - chrA Synpcc7942_0390 0.29 +3.5 382,677 + +3.5 382,682 + chrA Synpcc7942_0390 0.33 -1.0 382,687 + chrA Synpcc7942_0390 0.33 +0.3 382,690 - chrA Synpcc7942_0390 0.34 +0.5 382,701 + chrA Synpcc7942_0390 0.35 +0.9 382,741 + chrA Synpcc7942_0390 0.38 -0.7 382,743 + chrA Synpcc7942_0390 0.38 +0.2 382,751 + chrA Synpcc7942_0390 0.39 -0.4 382,759 - chrA Synpcc7942_0390 0.40 +0.4 382,772 - chrA Synpcc7942_0390 0.41 -0.1 382,783 + chrA Synpcc7942_0390 0.42 -0.7 382,794 + chrA Synpcc7942_0390 0.43 +1.1 382,850 - chrA Synpcc7942_0390 0.47 +0.3 382,850 - chrA Synpcc7942_0390 0.47 -1.4 382,928 + chrA Synpcc7942_0390 0.54 +1.4 382,928 + chrA Synpcc7942_0390 0.54 +0.8 382,928 + chrA Synpcc7942_0390 0.54 -2.1
Or see this region's nucleotide sequence