Strain Fitness in Synechococcus elongatus PCC 7942 around Synpcc7942_0283

Experiment: Doxycycline hyclate 0.0015625 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntglyA and Synpcc7942_0283 are separated by 196 nucleotidesSynpcc7942_0283 and ccmK3 are separated by 77 nucleotidesccmK3 and ccmK4 are separated by 44 nucleotidesccmK4 and Synpcc7942_0286 are separated by 84 nucleotides Synpcc7942_0282: glyA - serine hydroxymethyltransferase, at 278,139 to 279,422 glyA Synpcc7942_0283: Synpcc7942_0283 - Dihydrouridine synthase TIM-barrel protein nifR3, at 279,619 to 280,623 _0283 Synpcc7942_0284: ccmK3 - carbon dioxide concentrating mechanism protein CcmK, at 280,701 to 281,009 ccmK3 Synpcc7942_0285: ccmK4 - carbon dioxide concentrating mechanism protein CcmK, at 281,054 to 281,395 ccmK4 Synpcc7942_0286: Synpcc7942_0286 - hypothetical protein, at 281,480 to 281,842 _0286 Position (kb) 279 280 281Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2at 279.441 kb on + strandat 279.534 kb on + strandat 279.534 kb on + strandat 279.591 kb on + strandat 279.599 kb on - strandat 279.599 kb on - strandat 279.599 kb on - strandat 279.615 kb on + strandat 279.615 kb on + strandat 279.623 kb on - strandat 279.627 kb on + strandat 279.635 kb on - strandat 279.635 kb on - strandat 279.635 kb on - strandat 279.635 kb on - strandat 279.635 kb on - strandat 279.650 kb on + strandat 279.662 kb on + strandat 279.668 kb on - strandat 279.672 kb on + strandat 279.688 kb on - strandat 279.702 kb on + strandat 279.702 kb on + strandat 279.702 kb on + strandat 279.710 kb on - strandat 279.710 kb on - strandat 279.710 kb on - strandat 279.710 kb on - strandat 279.736 kb on + strand, within Synpcc7942_0283at 279.736 kb on + strand, within Synpcc7942_0283at 279.738 kb on - strand, within Synpcc7942_0283at 279.754 kb on + strand, within Synpcc7942_0283at 279.773 kb on + strand, within Synpcc7942_0283at 279.781 kb on - strand, within Synpcc7942_0283at 279.782 kb on + strand, within Synpcc7942_0283at 279.790 kb on - strand, within Synpcc7942_0283at 279.790 kb on - strand, within Synpcc7942_0283at 279.803 kb on + strand, within Synpcc7942_0283at 279.812 kb on + strand, within Synpcc7942_0283at 279.831 kb on + strand, within Synpcc7942_0283at 279.839 kb on - strand, within Synpcc7942_0283at 279.868 kb on + strand, within Synpcc7942_0283at 279.893 kb on + strand, within Synpcc7942_0283at 279.927 kb on - strand, within Synpcc7942_0283at 279.950 kb on - strand, within Synpcc7942_0283at 279.971 kb on - strand, within Synpcc7942_0283at 279.976 kb on + strand, within Synpcc7942_0283at 280.013 kb on + strand, within Synpcc7942_0283at 280.021 kb on - strand, within Synpcc7942_0283at 280.023 kb on + strand, within Synpcc7942_0283at 280.023 kb on + strand, within Synpcc7942_0283at 280.023 kb on + strand, within Synpcc7942_0283at 280.028 kb on + strand, within Synpcc7942_0283at 280.031 kb on - strand, within Synpcc7942_0283at 280.041 kb on - strand, within Synpcc7942_0283at 280.043 kb on + strand, within Synpcc7942_0283at 280.052 kb on + strand, within Synpcc7942_0283at 280.052 kb on + strand, within Synpcc7942_0283at 280.052 kb on + strand, within Synpcc7942_0283at 280.060 kb on - strand, within Synpcc7942_0283at 280.064 kb on - strand, within Synpcc7942_0283at 280.075 kb on + strand, within Synpcc7942_0283at 280.075 kb on + strand, within Synpcc7942_0283at 280.075 kb on + strand, within Synpcc7942_0283at 280.077 kb on + strandat 280.092 kb on + strand, within Synpcc7942_0283at 280.114 kb on - strand, within Synpcc7942_0283at 280.116 kb on + strand, within Synpcc7942_0283at 280.125 kb on + strand, within Synpcc7942_0283at 280.134 kb on - strand, within Synpcc7942_0283at 280.134 kb on - strand, within Synpcc7942_0283at 280.134 kb on - strand, within Synpcc7942_0283at 280.159 kb on + strand, within Synpcc7942_0283at 280.159 kb on + strand, within Synpcc7942_0283at 280.168 kb on - strand, within Synpcc7942_0283at 280.205 kb on - strand, within Synpcc7942_0283at 280.216 kb on + strand, within Synpcc7942_0283at 280.216 kb on + strand, within Synpcc7942_0283at 280.229 kb on - strand, within Synpcc7942_0283at 280.266 kb on + strand, within Synpcc7942_0283at 280.271 kb on - strand, within Synpcc7942_0283at 280.276 kb on - strand, within Synpcc7942_0283at 280.283 kb on + strand, within Synpcc7942_0283at 280.283 kb on + strand, within Synpcc7942_0283at 280.291 kb on - strand, within Synpcc7942_0283at 280.295 kb on - strand, within Synpcc7942_0283at 280.296 kb on - strand, within Synpcc7942_0283at 280.296 kb on - strand, within Synpcc7942_0283at 280.342 kb on - strand, within Synpcc7942_0283at 280.363 kb on + strand, within Synpcc7942_0283at 280.473 kb on - strand, within Synpcc7942_0283at 280.541 kb on - strandat 280.541 kb on - strandat 280.556 kb on - strandat 280.566 kb on + strandat 280.576 kb on + strandat 280.600 kb on + strandat 280.968 kb on - strand, within ccmK3at 281.396 kb on + strandat 281.396 kb on + strandat 281.449 kb on + strandat 281.506 kb on + strandat 281.567 kb on + strand, within Synpcc7942_0286at 281.567 kb on + strand, within Synpcc7942_0286

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Per-strain Table

Position Strand Gene LocusTag Fraction Doxycycline hyclate 0.0015625 mg/ml
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279,441 + -4.5
279,534 + -1.1
279,534 + -1.7
279,591 + -1.4
279,599 - -2.6
279,599 - -0.3
279,599 - +1.1
279,615 + -0.1
279,615 + +0.8
279,623 - -0.1
279,627 + +0.0
279,635 - +0.2
279,635 - +1.1
279,635 - +1.2
279,635 - +0.9
279,635 - -0.2
279,650 + +0.3
279,662 + +0.1
279,668 - -0.1
279,672 + +1.5
279,688 - -1.4
279,702 + +0.4
279,702 + -0.1
279,702 + +1.3
279,710 - -1.5
279,710 - +0.7
279,710 - -0.8
279,710 - -1.4
279,736 + Synpcc7942_0283 0.12 +0.7
279,736 + Synpcc7942_0283 0.12 +0.4
279,738 - Synpcc7942_0283 0.12 -0.5
279,754 + Synpcc7942_0283 0.13 -1.2
279,773 + Synpcc7942_0283 0.15 -0.7
279,781 - Synpcc7942_0283 0.16 -1.1
279,782 + Synpcc7942_0283 0.16 +0.5
279,790 - Synpcc7942_0283 0.17 -0.2
279,790 - Synpcc7942_0283 0.17 -1.4
279,803 + Synpcc7942_0283 0.18 -0.4
279,812 + Synpcc7942_0283 0.19 -0.1
279,831 + Synpcc7942_0283 0.21 +0.6
279,839 - Synpcc7942_0283 0.22 +0.3
279,868 + Synpcc7942_0283 0.25 +2.5
279,893 + Synpcc7942_0283 0.27 -1.7
279,927 - Synpcc7942_0283 0.31 -0.9
279,950 - Synpcc7942_0283 0.33 +0.1
279,971 - Synpcc7942_0283 0.35 +0.3
279,976 + Synpcc7942_0283 0.36 -1.7
280,013 + Synpcc7942_0283 0.39 -1.0
280,021 - Synpcc7942_0283 0.40 -0.3
280,023 + Synpcc7942_0283 0.40 +0.5
280,023 + Synpcc7942_0283 0.40 -0.1
280,023 + Synpcc7942_0283 0.40 -0.8
280,028 + Synpcc7942_0283 0.41 +0.9
280,031 - Synpcc7942_0283 0.41 -0.9
280,041 - Synpcc7942_0283 0.42 -1.1
280,043 + Synpcc7942_0283 0.42 -0.5
280,052 + Synpcc7942_0283 0.43 -0.7
280,052 + Synpcc7942_0283 0.43 +0.1
280,052 + Synpcc7942_0283 0.43 -0.1
280,060 - Synpcc7942_0283 0.44 -1.7
280,064 - Synpcc7942_0283 0.44 -0.1
280,075 + Synpcc7942_0283 0.45 +0.9
280,075 + Synpcc7942_0283 0.45 -0.4
280,075 + Synpcc7942_0283 0.45 +2.3
280,077 + +2.7
280,092 + Synpcc7942_0283 0.47 -1.3
280,114 - Synpcc7942_0283 0.49 +1.5
280,116 + Synpcc7942_0283 0.49 -1.1
280,125 + Synpcc7942_0283 0.50 -2.1
280,134 - Synpcc7942_0283 0.51 -0.4
280,134 - Synpcc7942_0283 0.51 +0.4
280,134 - Synpcc7942_0283 0.51 +0.6
280,159 + Synpcc7942_0283 0.54 +0.5
280,159 + Synpcc7942_0283 0.54 +0.1
280,168 - Synpcc7942_0283 0.55 -1.1
280,205 - Synpcc7942_0283 0.58 -2.3
280,216 + Synpcc7942_0283 0.59 +1.5
280,216 + Synpcc7942_0283 0.59 +0.8
280,229 - Synpcc7942_0283 0.61 +0.2
280,266 + Synpcc7942_0283 0.64 +1.0
280,271 - Synpcc7942_0283 0.65 -1.7
280,276 - Synpcc7942_0283 0.65 -3.1
280,283 + Synpcc7942_0283 0.66 +1.7
280,283 + Synpcc7942_0283 0.66 +0.2
280,291 - Synpcc7942_0283 0.67 +0.5
280,295 - Synpcc7942_0283 0.67 -1.1
280,296 - Synpcc7942_0283 0.67 +1.0
280,296 - Synpcc7942_0283 0.67 -2.7
280,342 - Synpcc7942_0283 0.72 +0.6
280,363 + Synpcc7942_0283 0.74 -1.0
280,473 - Synpcc7942_0283 0.85 -1.2
280,541 - +0.6
280,541 - -0.4
280,556 - -0.2
280,566 + -0.3
280,576 + +0.0
280,600 + -1.3
280,968 - ccmK3 Synpcc7942_0284 0.86 -1.7
281,396 + -0.1
281,396 + -0.4
281,449 + +1.5
281,506 + +0.1
281,567 + Synpcc7942_0286 0.24 +0.4
281,567 + Synpcc7942_0286 0.24 +0.6

Or see this region's nucleotide sequence