Strain Fitness in Pseudomonas fluorescens FW300-N1B4 around Pf1N1B4_597

Experiment: D-Mannose (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPf1N1B4_596 and Pf1N1B4_597 are separated by 129 nucleotidesPf1N1B4_597 and Pf1N1B4_598 are separated by 228 nucleotides Pf1N1B4_596 - Glucose ABC transport system, periplasmic sugar-binding protein, at 687,656 to 688,963 _596 Pf1N1B4_597 - D-mannose isomerase (EC 5.3.1.7) (from data), at 689,093 to 690,352 _597 Pf1N1B4_598 - Integral membrane sensor signal transduction histidine kinase (EC 2.7.13.3), glucose catabolism cluster, at 690,581 to 692,050 _598 Position (kb) 689 690 691Strain fitness (log2 ratio) -4 -3 -2 -1 0 1at 688.311 kb on + strand, within Pf1N1B4_596at 688.311 kb on + strand, within Pf1N1B4_596at 688.311 kb on + strand, within Pf1N1B4_596at 688.431 kb on + strand, within Pf1N1B4_596at 688.432 kb on - strand, within Pf1N1B4_596at 688.432 kb on - strand, within Pf1N1B4_596at 688.551 kb on + strand, within Pf1N1B4_596at 688.551 kb on + strand, within Pf1N1B4_596at 688.551 kb on + strand, within Pf1N1B4_596at 688.551 kb on + strand, within Pf1N1B4_596at 688.551 kb on + strand, within Pf1N1B4_596at 688.965 kb on + strandat 688.965 kb on + strandat 688.965 kb on + strandat 688.965 kb on + strandat 688.965 kb on + strandat 688.965 kb on + strandat 688.966 kb on - strandat 688.966 kb on - strandat 688.968 kb on + strandat 688.968 kb on + strandat 688.969 kb on - strandat 688.986 kb on + strandat 688.986 kb on + strandat 688.987 kb on - strandat 688.987 kb on - strandat 689.016 kb on + strandat 689.017 kb on - strandat 689.017 kb on - strandat 689.025 kb on - strandat 689.025 kb on - strandat 689.034 kb on - strandat 689.083 kb on - strandat 689.083 kb on - strandat 689.083 kb on - strandat 689.086 kb on + strandat 689.086 kb on + strandat 689.086 kb on + strandat 689.086 kb on + strandat 689.086 kb on + strandat 689.086 kb on + strandat 689.086 kb on + strandat 689.086 kb on + strandat 689.087 kb on - strandat 689.087 kb on - strandat 689.087 kb on - strandat 689.087 kb on - strandat 689.087 kb on - strandat 689.087 kb on - strandat 689.087 kb on - strandat 689.087 kb on - strandat 689.087 kb on - strandat 689.087 kb on - strandat 689.087 kb on - strandat 689.188 kb on - strandat 689.322 kb on + strand, within Pf1N1B4_597at 689.322 kb on + strand, within Pf1N1B4_597at 689.323 kb on - strand, within Pf1N1B4_597at 689.434 kb on - strand, within Pf1N1B4_597at 689.434 kb on - strand, within Pf1N1B4_597at 689.434 kb on - strand, within Pf1N1B4_597at 689.524 kb on + strandat 689.524 kb on + strand, within Pf1N1B4_597at 689.524 kb on + strand, within Pf1N1B4_597at 689.524 kb on + strand, within Pf1N1B4_597at 689.524 kb on + strand, within Pf1N1B4_597at 689.524 kb on + strand, within Pf1N1B4_597at 689.524 kb on + strand, within Pf1N1B4_597at 689.524 kb on + strand, within Pf1N1B4_597at 689.524 kb on + strand, within Pf1N1B4_597at 689.525 kb on - strand, within Pf1N1B4_597at 689.525 kb on - strand, within Pf1N1B4_597at 689.525 kb on - strand, within Pf1N1B4_597at 689.525 kb on - strand, within Pf1N1B4_597at 689.525 kb on - strand, within Pf1N1B4_597at 689.525 kb on - strand, within Pf1N1B4_597at 689.525 kb on - strand, within Pf1N1B4_597at 689.525 kb on - strand, within Pf1N1B4_597at 689.525 kb on - strand, within Pf1N1B4_597at 689.528 kb on + strand, within Pf1N1B4_597at 689.529 kb on - strand, within Pf1N1B4_597at 689.637 kb on + strand, within Pf1N1B4_597at 689.638 kb on - strand, within Pf1N1B4_597at 689.643 kb on + strand, within Pf1N1B4_597at 689.643 kb on + strandat 689.644 kb on - strand, within Pf1N1B4_597at 689.644 kb on - strand, within Pf1N1B4_597at 689.644 kb on - strand, within Pf1N1B4_597at 689.691 kb on + strand, within Pf1N1B4_597at 689.692 kb on - strand, within Pf1N1B4_597at 689.692 kb on - strand, within Pf1N1B4_597at 689.692 kb on - strand, within Pf1N1B4_597at 689.692 kb on - strand, within Pf1N1B4_597at 689.829 kb on + strand, within Pf1N1B4_597at 689.857 kb on + strand, within Pf1N1B4_597at 690.000 kb on + strand, within Pf1N1B4_597at 690.000 kb on + strand, within Pf1N1B4_597at 690.163 kb on + strand, within Pf1N1B4_597at 690.164 kb on - strand, within Pf1N1B4_597at 690.164 kb on - strand, within Pf1N1B4_597at 690.373 kb on + strandat 690.373 kb on + strandat 690.374 kb on - strandat 690.374 kb on - strandat 690.374 kb on - strandat 690.390 kb on + strandat 690.391 kb on - strandat 690.432 kb on + strandat 690.432 kb on + strandat 690.432 kb on + strandat 690.468 kb on + strandat 690.468 kb on + strandat 690.468 kb on + strandat 690.468 kb on + strandat 690.468 kb on + strandat 690.468 kb on + strandat 690.468 kb on + strandat 690.468 kb on + strandat 690.468 kb on + strandat 690.468 kb on + strandat 690.469 kb on - strandat 690.469 kb on - strandat 690.469 kb on - strandat 690.469 kb on - strandat 690.593 kb on - strandat 690.847 kb on - strand, within Pf1N1B4_598at 690.967 kb on - strand, within Pf1N1B4_598

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Mannose (C)
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688,311 + Pf1N1B4_596 0.50 -1.5
688,311 + Pf1N1B4_596 0.50 -1.0
688,311 + Pf1N1B4_596 0.50 -1.6
688,431 + Pf1N1B4_596 0.59 -0.0
688,432 - Pf1N1B4_596 0.59 -1.6
688,432 - Pf1N1B4_596 0.59 -1.6
688,551 + Pf1N1B4_596 0.68 -2.0
688,551 + Pf1N1B4_596 0.68 -1.6
688,551 + Pf1N1B4_596 0.68 -0.0
688,551 + Pf1N1B4_596 0.68 -2.8
688,551 + Pf1N1B4_596 0.68 -2.0
688,965 + -0.0
688,965 + -3.2
688,965 + -2.0
688,965 + -1.6
688,965 + -2.6
688,965 + -1.6
688,966 - -3.4
688,966 - -1.6
688,968 + +1.0
688,968 + -0.0
688,969 - -1.0
688,986 + -2.0
688,986 + -1.0
688,987 - -0.0
688,987 - -0.6
689,016 + -3.2
689,017 - +0.5
689,017 - +1.0
689,025 - -1.0
689,025 - +0.5
689,034 - -1.5
689,083 - -3.9
689,083 - -1.0
689,083 - -2.0
689,086 + -0.6
689,086 + -0.6
689,086 + -2.5
689,086 + -0.8
689,086 + -1.0
689,086 + -1.6
689,086 + +1.0
689,086 + +1.0
689,087 - -1.6
689,087 - -1.8
689,087 - -0.0
689,087 - -1.0
689,087 - -2.0
689,087 - -2.0
689,087 - -0.6
689,087 - -0.5
689,087 - -1.0
689,087 - -2.6
689,087 - -2.6
689,188 - -2.6
689,322 + Pf1N1B4_597 0.18 -2.0
689,322 + Pf1N1B4_597 0.18 -2.0
689,323 - Pf1N1B4_597 0.18 -1.6
689,434 - Pf1N1B4_597 0.27 -0.0
689,434 - Pf1N1B4_597 0.27 -2.0
689,434 - Pf1N1B4_597 0.27 -2.4
689,524 + -0.0
689,524 + Pf1N1B4_597 0.34 -3.2
689,524 + Pf1N1B4_597 0.34 -1.0
689,524 + Pf1N1B4_597 0.34 -1.0
689,524 + Pf1N1B4_597 0.34 -1.6
689,524 + Pf1N1B4_597 0.34 -2.0
689,524 + Pf1N1B4_597 0.34 -3.0
689,524 + Pf1N1B4_597 0.34 +1.3
689,524 + Pf1N1B4_597 0.34 +0.4
689,525 - Pf1N1B4_597 0.34 -2.8
689,525 - Pf1N1B4_597 0.34 -1.6
689,525 - Pf1N1B4_597 0.34 -2.6
689,525 - Pf1N1B4_597 0.34 -3.0
689,525 - Pf1N1B4_597 0.34 -1.0
689,525 - Pf1N1B4_597 0.34 +0.5
689,525 - Pf1N1B4_597 0.34 -1.6
689,525 - Pf1N1B4_597 0.34 -1.0
689,525 - Pf1N1B4_597 0.34 -3.6
689,528 + Pf1N1B4_597 0.35 -3.0
689,529 - Pf1N1B4_597 0.35 -1.6
689,637 + Pf1N1B4_597 0.43 -0.0
689,638 - Pf1N1B4_597 0.43 -1.0
689,643 + Pf1N1B4_597 0.44 -1.6
689,643 + -1.0
689,644 - Pf1N1B4_597 0.44 -0.9
689,644 - Pf1N1B4_597 0.44 -2.8
689,644 - Pf1N1B4_597 0.44 -2.0
689,691 + Pf1N1B4_597 0.47 -2.4
689,692 - Pf1N1B4_597 0.48 -1.0
689,692 - Pf1N1B4_597 0.48 -1.0
689,692 - Pf1N1B4_597 0.48 -2.4
689,692 - Pf1N1B4_597 0.48 -2.6
689,829 + Pf1N1B4_597 0.58 -2.0
689,857 + Pf1N1B4_597 0.61 -2.4
690,000 + Pf1N1B4_597 0.72 -1.0
690,000 + Pf1N1B4_597 0.72 -2.0
690,163 + Pf1N1B4_597 0.85 -3.4
690,164 - Pf1N1B4_597 0.85 -2.8
690,164 - Pf1N1B4_597 0.85 -0.0
690,373 + -3.2
690,373 + -4.2
690,374 - +1.0
690,374 - +1.5
690,374 - -0.1
690,390 + -2.0
690,391 - +0.4
690,432 + -2.6
690,432 + -0.0
690,432 + -1.6
690,468 + -0.0
690,468 + +0.7
690,468 + +0.4
690,468 + -0.0
690,468 + -2.0
690,468 + -0.0
690,468 + +0.5
690,468 + -0.6
690,468 + -2.0
690,468 + -0.0
690,469 - +0.4
690,469 - +0.4
690,469 - -1.6
690,469 - -0.4
690,593 - -1.6
690,847 - Pf1N1B4_598 0.18 -0.0
690,967 - Pf1N1B4_598 0.26 -3.4

Or see this region's nucleotide sequence