Strain Fitness in Pseudomonas fluorescens FW300-N1B4 around Pf1N1B4_593

Experiment: D-Mannose (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPf1N1B4_592 and Pf1N1B4_593 are separated by 222 nucleotidesPf1N1B4_593 and Pf1N1B4_594 are separated by 3 nucleotidesPf1N1B4_594 and Pf1N1B4_595 overlap by 8 nucleotides Pf1N1B4_592 - Glucose-selective porin OprB, at 682,990 to 684,336 _592 Pf1N1B4_593 - Glucose ABC transporter, ATP-binding subunit (EC 3.6.3.-), at 684,559 to 685,719 _593 Pf1N1B4_594 - Glucose ABC transport system, inner membrane component 2, at 685,723 to 686,568 _594 Pf1N1B4_595 - Glucose ABC transport system, inner membrane component 1, at 686,561 to 687,505 _595 Position (kb) 684 685 686Strain fitness (log2 ratio) -5 -4 -3 -2 -1 0 1 2at 683.614 kb on - strand, within Pf1N1B4_592at 683.672 kb on + strand, within Pf1N1B4_592at 683.672 kb on + strand, within Pf1N1B4_592at 683.690 kb on + strand, within Pf1N1B4_592at 683.691 kb on - strand, within Pf1N1B4_592at 683.691 kb on - strand, within Pf1N1B4_592at 683.711 kb on + strand, within Pf1N1B4_592at 683.711 kb on + strand, within Pf1N1B4_592at 683.712 kb on - strand, within Pf1N1B4_592at 683.712 kb on - strand, within Pf1N1B4_592at 683.712 kb on - strand, within Pf1N1B4_592at 683.712 kb on - strand, within Pf1N1B4_592at 683.712 kb on - strand, within Pf1N1B4_592at 683.919 kb on + strand, within Pf1N1B4_592at 683.933 kb on + strand, within Pf1N1B4_592at 683.933 kb on + strand, within Pf1N1B4_592at 683.934 kb on - strand, within Pf1N1B4_592at 683.988 kb on + strand, within Pf1N1B4_592at 683.988 kb on + strand, within Pf1N1B4_592at 684.099 kb on - strand, within Pf1N1B4_592at 684.123 kb on - strand, within Pf1N1B4_592at 684.158 kb on + strand, within Pf1N1B4_592at 684.178 kb on - strand, within Pf1N1B4_592at 684.309 kb on + strandat 684.309 kb on + strandat 684.309 kb on + strandat 684.310 kb on - strandat 684.340 kb on + strandat 684.340 kb on + strandat 684.341 kb on - strandat 684.355 kb on - strandat 684.360 kb on + strandat 684.360 kb on + strandat 684.363 kb on + strandat 684.364 kb on - strandat 684.373 kb on + strandat 684.377 kb on + strandat 684.378 kb on - strandat 684.378 kb on - strandat 684.388 kb on - strandat 684.509 kb on - strandat 684.557 kb on - strandat 684.580 kb on + strandat 684.969 kb on + strand, within Pf1N1B4_593at 685.049 kb on + strand, within Pf1N1B4_593at 685.049 kb on + strandat 685.049 kb on + strand, within Pf1N1B4_593at 685.050 kb on - strand, within Pf1N1B4_593at 685.050 kb on - strand, within Pf1N1B4_593at 685.050 kb on - strand, within Pf1N1B4_593at 685.050 kb on - strand, within Pf1N1B4_593at 685.050 kb on - strand, within Pf1N1B4_593at 685.050 kb on - strand, within Pf1N1B4_593at 685.050 kb on - strand, within Pf1N1B4_593at 685.148 kb on + strand, within Pf1N1B4_593at 685.148 kb on + strand, within Pf1N1B4_593at 685.251 kb on - strand, within Pf1N1B4_593at 685.251 kb on - strand, within Pf1N1B4_593at 685.590 kb on + strand, within Pf1N1B4_593at 685.591 kb on - strand, within Pf1N1B4_593at 685.591 kb on - strand, within Pf1N1B4_593at 685.682 kb on + strandat 685.682 kb on + strandat 685.682 kb on + strandat 685.683 kb on - strandat 685.702 kb on + strandat 685.703 kb on - strandat 685.703 kb on - strandat 685.763 kb on + strandat 685.764 kb on - strandat 685.777 kb on + strandat 685.778 kb on - strandat 685.778 kb on - strandat 685.781 kb on + strandat 685.781 kb on + strandat 685.781 kb on + strandat 685.781 kb on + strandat 685.782 kb on - strandat 685.835 kb on + strand, within Pf1N1B4_594at 685.835 kb on + strand, within Pf1N1B4_594at 685.835 kb on + strand, within Pf1N1B4_594at 685.835 kb on + strand, within Pf1N1B4_594at 685.836 kb on - strand, within Pf1N1B4_594at 685.836 kb on - strand, within Pf1N1B4_594at 686.075 kb on + strand, within Pf1N1B4_594at 686.075 kb on + strand, within Pf1N1B4_594at 686.075 kb on + strand, within Pf1N1B4_594at 686.075 kb on + strand, within Pf1N1B4_594at 686.076 kb on - strand, within Pf1N1B4_594at 686.076 kb on - strand, within Pf1N1B4_594at 686.076 kb on - strand, within Pf1N1B4_594at 686.076 kb on - strand, within Pf1N1B4_594at 686.078 kb on + strand, within Pf1N1B4_594at 686.078 kb on + strand, within Pf1N1B4_594at 686.078 kb on + strand, within Pf1N1B4_594at 686.078 kb on + strandat 686.079 kb on - strand, within Pf1N1B4_594at 686.079 kb on - strand, within Pf1N1B4_594at 686.079 kb on - strand, within Pf1N1B4_594at 686.279 kb on + strand, within Pf1N1B4_594at 686.280 kb on - strandat 686.304 kb on + strand, within Pf1N1B4_594at 686.304 kb on + strand, within Pf1N1B4_594at 686.305 kb on - strand, within Pf1N1B4_594at 686.305 kb on - strand, within Pf1N1B4_594at 686.305 kb on - strand, within Pf1N1B4_594at 686.486 kb on + strandat 686.486 kb on + strandat 686.486 kb on + strandat 686.487 kb on - strandat 686.487 kb on - strandat 686.487 kb on - strandat 686.487 kb on - strandat 686.516 kb on + strandat 686.516 kb on + strandat 686.516 kb on + strandat 686.516 kb on + strandat 686.516 kb on + strandat 686.532 kb on + strandat 686.563 kb on - strandat 686.688 kb on + strand, within Pf1N1B4_595at 686.688 kb on + strand, within Pf1N1B4_595at 686.688 kb on + strand, within Pf1N1B4_595at 686.689 kb on - strand, within Pf1N1B4_595at 686.718 kb on + strand, within Pf1N1B4_595at 686.719 kb on - strand, within Pf1N1B4_595

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Mannose (C)
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683,614 - Pf1N1B4_592 0.46 +1.3
683,672 + Pf1N1B4_592 0.51 +1.0
683,672 + Pf1N1B4_592 0.51 -0.8
683,690 + Pf1N1B4_592 0.52 -0.0
683,691 - Pf1N1B4_592 0.52 +1.1
683,691 - Pf1N1B4_592 0.52 -1.0
683,711 + Pf1N1B4_592 0.54 +0.5
683,711 + Pf1N1B4_592 0.54 +1.2
683,712 - Pf1N1B4_592 0.54 -1.3
683,712 - Pf1N1B4_592 0.54 +0.5
683,712 - Pf1N1B4_592 0.54 +0.6
683,712 - Pf1N1B4_592 0.54 -1.0
683,712 - Pf1N1B4_592 0.54 +0.4
683,919 + Pf1N1B4_592 0.69 +1.2
683,933 + Pf1N1B4_592 0.70 -0.0
683,933 + Pf1N1B4_592 0.70 +0.5
683,934 - Pf1N1B4_592 0.70 -0.5
683,988 + Pf1N1B4_592 0.74 +0.4
683,988 + Pf1N1B4_592 0.74 -1.6
684,099 - Pf1N1B4_592 0.82 +0.0
684,123 - Pf1N1B4_592 0.84 +1.0
684,158 + Pf1N1B4_592 0.87 +1.0
684,178 - Pf1N1B4_592 0.88 -0.9
684,309 + +1.0
684,309 + -1.0
684,309 + -0.0
684,310 - +2.0
684,340 + -0.0
684,340 + -0.0
684,341 - +0.1
684,355 - +1.0
684,360 + -0.0
684,360 + -0.5
684,363 + +0.4
684,364 - -0.3
684,373 + -0.8
684,377 + -0.5
684,378 - -0.0
684,378 - -0.0
684,388 - +0.8
684,509 - -0.0
684,557 - -2.4
684,580 + -2.0
684,969 + Pf1N1B4_593 0.35 -1.6
685,049 + Pf1N1B4_593 0.42 -2.0
685,049 + -1.0
685,049 + Pf1N1B4_593 0.42 -0.0
685,050 - Pf1N1B4_593 0.42 -1.6
685,050 - Pf1N1B4_593 0.42 -2.0
685,050 - Pf1N1B4_593 0.42 -2.0
685,050 - Pf1N1B4_593 0.42 -2.0
685,050 - Pf1N1B4_593 0.42 -1.6
685,050 - Pf1N1B4_593 0.42 -0.0
685,050 - Pf1N1B4_593 0.42 -1.6
685,148 + Pf1N1B4_593 0.51 -1.6
685,148 + Pf1N1B4_593 0.51 +0.5
685,251 - Pf1N1B4_593 0.60 -2.0
685,251 - Pf1N1B4_593 0.60 -3.9
685,590 + Pf1N1B4_593 0.89 +1.0
685,591 - Pf1N1B4_593 0.89 -2.8
685,591 - Pf1N1B4_593 0.89 -1.0
685,682 + -2.4
685,682 + -1.4
685,682 + -1.6
685,683 - -1.0
685,702 + -0.0
685,703 - -0.0
685,703 - -0.0
685,763 + -1.0
685,764 - -2.0
685,777 + -2.0
685,778 - -2.4
685,778 - -0.9
685,781 + -2.4
685,781 + -1.6
685,781 + -2.6
685,781 + -1.6
685,782 - -2.0
685,835 + Pf1N1B4_594 0.13 -2.8
685,835 + Pf1N1B4_594 0.13 -1.4
685,835 + Pf1N1B4_594 0.13 -1.0
685,835 + Pf1N1B4_594 0.13 -3.9
685,836 - Pf1N1B4_594 0.13 -1.6
685,836 - Pf1N1B4_594 0.13 -0.6
686,075 + Pf1N1B4_594 0.42 -1.6
686,075 + Pf1N1B4_594 0.42 -1.6
686,075 + Pf1N1B4_594 0.42 -0.4
686,075 + Pf1N1B4_594 0.42 -2.6
686,076 - Pf1N1B4_594 0.42 -1.6
686,076 - Pf1N1B4_594 0.42 -1.4
686,076 - Pf1N1B4_594 0.42 -2.0
686,076 - Pf1N1B4_594 0.42 +0.3
686,078 + Pf1N1B4_594 0.42 -1.7
686,078 + Pf1N1B4_594 0.42 -1.6
686,078 + Pf1N1B4_594 0.42 -1.0
686,078 + -1.6
686,079 - Pf1N1B4_594 0.42 -1.6
686,079 - Pf1N1B4_594 0.42 -1.6
686,079 - Pf1N1B4_594 0.42 +1.0
686,279 + Pf1N1B4_594 0.66 +0.4
686,280 - -1.0
686,304 + Pf1N1B4_594 0.69 -0.0
686,304 + Pf1N1B4_594 0.69 -3.0
686,305 - Pf1N1B4_594 0.69 -2.4
686,305 - Pf1N1B4_594 0.69 -1.6
686,305 - Pf1N1B4_594 0.69 -0.0
686,486 + -1.4
686,486 + -2.0
686,486 + -1.0
686,487 - -1.5
686,487 - -1.0
686,487 - -1.0
686,487 - -1.8
686,516 + -1.6
686,516 + -2.0
686,516 + -2.4
686,516 + -1.6
686,516 + -5.4
686,532 + -2.0
686,563 - -2.6
686,688 + Pf1N1B4_595 0.13 -2.0
686,688 + Pf1N1B4_595 0.13 -1.0
686,688 + Pf1N1B4_595 0.13 -2.2
686,689 - Pf1N1B4_595 0.14 -0.6
686,718 + Pf1N1B4_595 0.17 -2.4
686,719 - Pf1N1B4_595 0.17 -1.5

Or see this region's nucleotide sequence