Strain Fitness in Pseudomonas fluorescens FW300-N1B4 around Pf1N1B4_1922

Experiment: D-Mannose (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPf1N1B4_1920 and Pf1N1B4_1921 are separated by 10 nucleotidesPf1N1B4_1921 and Pf1N1B4_1922 are separated by 81 nucleotidesPf1N1B4_1922 and Pf1N1B4_1923 are separated by 181 nucleotides Pf1N1B4_1920 - Glycyl-tRNA synthetase beta chain (EC 6.1.1.14), at 2,194,032 to 2,196,086 _1920 Pf1N1B4_1921 - D-glycero-D-manno-heptose 1,7-bisphosphate phosphatase (EC 3.1.1.-); Histidinol-phosphatase (EC 3.1.3.15), at 2,196,097 to 2,196,630 _1921 Pf1N1B4_1922 - 1-acyl-sn-glycerol-3-phosphate acyltransferase (EC 2.3.1.51), at 2,196,712 to 2,197,491 _1922 Pf1N1B4_1923 - Signal transduction histidine kinase, at 2,197,673 to 2,199,985 _1923 Position (kb) 2196 2197 2198Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 2197.563 kb on + strandat 2197.582 kb on + strandat 2197.603 kb on + strandat 2197.603 kb on + strandat 2197.603 kb on + strandat 2197.604 kb on - strandat 2197.635 kb on + strandat 2197.638 kb on - strandat 2197.674 kb on + strandat 2197.685 kb on + strandat 2197.692 kb on - strandat 2197.692 kb on - strandat 2197.819 kb on + strandat 2197.898 kb on + strandat 2197.899 kb on - strandat 2197.914 kb on + strand, within Pf1N1B4_1923at 2197.914 kb on + strand, within Pf1N1B4_1923at 2197.914 kb on + strand, within Pf1N1B4_1923at 2197.914 kb on + strand, within Pf1N1B4_1923at 2197.914 kb on + strand, within Pf1N1B4_1923at 2197.914 kb on + strand, within Pf1N1B4_1923at 2197.915 kb on - strand, within Pf1N1B4_1923at 2197.915 kb on - strand, within Pf1N1B4_1923at 2197.915 kb on - strand, within Pf1N1B4_1923at 2197.915 kb on - strand, within Pf1N1B4_1923at 2197.915 kb on - strand, within Pf1N1B4_1923at 2197.915 kb on - strand, within Pf1N1B4_1923at 2197.915 kb on - strand, within Pf1N1B4_1923at 2197.953 kb on + strand, within Pf1N1B4_1923at 2197.953 kb on + strand, within Pf1N1B4_1923at 2197.953 kb on + strand, within Pf1N1B4_1923at 2197.953 kb on + strand, within Pf1N1B4_1923at 2197.953 kb on + strand, within Pf1N1B4_1923at 2197.953 kb on + strand, within Pf1N1B4_1923at 2197.954 kb on - strand, within Pf1N1B4_1923at 2197.954 kb on - strand, within Pf1N1B4_1923at 2197.954 kb on - strand, within Pf1N1B4_1923at 2197.954 kb on - strand, within Pf1N1B4_1923at 2197.954 kb on - strand, within Pf1N1B4_1923at 2197.954 kb on - strand, within Pf1N1B4_1923at 2197.954 kb on - strand, within Pf1N1B4_1923at 2198.099 kb on - strand, within Pf1N1B4_1923at 2198.140 kb on - strand, within Pf1N1B4_1923at 2198.140 kb on - strand, within Pf1N1B4_1923at 2198.140 kb on - strand, within Pf1N1B4_1923at 2198.201 kb on + strand, within Pf1N1B4_1923at 2198.201 kb on + strand, within Pf1N1B4_1923at 2198.201 kb on + strand, within Pf1N1B4_1923at 2198.201 kb on + strand, within Pf1N1B4_1923at 2198.201 kb on + strand, within Pf1N1B4_1923at 2198.202 kb on - strand, within Pf1N1B4_1923at 2198.202 kb on - strand, within Pf1N1B4_1923at 2198.202 kb on - strand, within Pf1N1B4_1923at 2198.202 kb on - strand, within Pf1N1B4_1923at 2198.202 kb on - strand, within Pf1N1B4_1923at 2198.202 kb on - strand, within Pf1N1B4_1923at 2198.202 kb on - strand, within Pf1N1B4_1923at 2198.202 kb on - strand, within Pf1N1B4_1923at 2198.202 kb on - strand, within Pf1N1B4_1923at 2198.207 kb on + strand, within Pf1N1B4_1923at 2198.207 kb on + strand, within Pf1N1B4_1923at 2198.207 kb on + strand, within Pf1N1B4_1923at 2198.207 kb on + strand, within Pf1N1B4_1923at 2198.207 kb on + strand, within Pf1N1B4_1923at 2198.207 kb on + strand, within Pf1N1B4_1923at 2198.208 kb on - strand, within Pf1N1B4_1923at 2198.208 kb on - strand, within Pf1N1B4_1923at 2198.208 kb on - strand, within Pf1N1B4_1923at 2198.208 kb on - strand, within Pf1N1B4_1923at 2198.208 kb on - strand, within Pf1N1B4_1923at 2198.208 kb on - strand, within Pf1N1B4_1923at 2198.375 kb on + strand, within Pf1N1B4_1923at 2198.375 kb on + strand, within Pf1N1B4_1923at 2198.375 kb on + strand, within Pf1N1B4_1923at 2198.375 kb on + strand, within Pf1N1B4_1923at 2198.375 kb on + strand, within Pf1N1B4_1923at 2198.375 kb on + strand, within Pf1N1B4_1923at 2198.375 kb on + strand, within Pf1N1B4_1923at 2198.376 kb on - strand, within Pf1N1B4_1923at 2198.376 kb on - strand, within Pf1N1B4_1923at 2198.376 kb on - strand, within Pf1N1B4_1923at 2198.376 kb on - strand, within Pf1N1B4_1923at 2198.376 kb on - strand, within Pf1N1B4_1923at 2198.376 kb on - strand, within Pf1N1B4_1923at 2198.376 kb on - strand, within Pf1N1B4_1923at 2198.378 kb on + strand, within Pf1N1B4_1923at 2198.379 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Mannose (C)
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2,197,563 + -1.1
2,197,582 + -0.2
2,197,603 + -0.2
2,197,603 + +0.4
2,197,603 + +1.4
2,197,604 - -0.3
2,197,635 + -3.3
2,197,638 - -0.3
2,197,674 + +0.4
2,197,685 + -0.1
2,197,692 - -0.6
2,197,692 - +0.6
2,197,819 + -0.2
2,197,898 + -0.7
2,197,899 - -1.6
2,197,914 + Pf1N1B4_1923 0.10 +1.7
2,197,914 + Pf1N1B4_1923 0.10 -0.6
2,197,914 + Pf1N1B4_1923 0.10 +0.3
2,197,914 + Pf1N1B4_1923 0.10 -0.2
2,197,914 + Pf1N1B4_1923 0.10 -0.6
2,197,914 + Pf1N1B4_1923 0.10 +0.1
2,197,915 - Pf1N1B4_1923 0.10 +0.0
2,197,915 - Pf1N1B4_1923 0.10 +0.1
2,197,915 - Pf1N1B4_1923 0.10 -1.0
2,197,915 - Pf1N1B4_1923 0.10 +0.4
2,197,915 - Pf1N1B4_1923 0.10 -0.3
2,197,915 - Pf1N1B4_1923 0.10 +0.4
2,197,915 - Pf1N1B4_1923 0.10 -0.2
2,197,953 + Pf1N1B4_1923 0.12 -0.2
2,197,953 + Pf1N1B4_1923 0.12 +0.8
2,197,953 + Pf1N1B4_1923 0.12 +0.2
2,197,953 + Pf1N1B4_1923 0.12 -0.1
2,197,953 + Pf1N1B4_1923 0.12 +0.2
2,197,953 + Pf1N1B4_1923 0.12 +1.0
2,197,954 - Pf1N1B4_1923 0.12 -0.2
2,197,954 - Pf1N1B4_1923 0.12 +0.0
2,197,954 - Pf1N1B4_1923 0.12 -0.3
2,197,954 - Pf1N1B4_1923 0.12 +0.4
2,197,954 - Pf1N1B4_1923 0.12 +1.2
2,197,954 - Pf1N1B4_1923 0.12 +0.6
2,197,954 - Pf1N1B4_1923 0.12 -0.3
2,198,099 - Pf1N1B4_1923 0.18 -0.1
2,198,140 - Pf1N1B4_1923 0.20 +1.4
2,198,140 - Pf1N1B4_1923 0.20 +0.4
2,198,140 - Pf1N1B4_1923 0.20 -1.5
2,198,201 + Pf1N1B4_1923 0.23 +0.3
2,198,201 + Pf1N1B4_1923 0.23 -0.9
2,198,201 + Pf1N1B4_1923 0.23 -1.5
2,198,201 + Pf1N1B4_1923 0.23 +1.0
2,198,201 + Pf1N1B4_1923 0.23 +2.4
2,198,202 - Pf1N1B4_1923 0.23 -0.3
2,198,202 - Pf1N1B4_1923 0.23 -1.2
2,198,202 - Pf1N1B4_1923 0.23 +0.6
2,198,202 - Pf1N1B4_1923 0.23 -0.0
2,198,202 - Pf1N1B4_1923 0.23 -0.7
2,198,202 - Pf1N1B4_1923 0.23 +0.3
2,198,202 - Pf1N1B4_1923 0.23 -0.2
2,198,202 - Pf1N1B4_1923 0.23 +0.4
2,198,202 - Pf1N1B4_1923 0.23 +0.6
2,198,207 + Pf1N1B4_1923 0.23 -1.2
2,198,207 + Pf1N1B4_1923 0.23 -1.6
2,198,207 + Pf1N1B4_1923 0.23 -1.6
2,198,207 + Pf1N1B4_1923 0.23 +0.4
2,198,207 + Pf1N1B4_1923 0.23 -0.1
2,198,207 + Pf1N1B4_1923 0.23 -0.6
2,198,208 - Pf1N1B4_1923 0.23 +0.2
2,198,208 - Pf1N1B4_1923 0.23 +0.0
2,198,208 - Pf1N1B4_1923 0.23 +0.8
2,198,208 - Pf1N1B4_1923 0.23 -2.6
2,198,208 - Pf1N1B4_1923 0.23 +0.4
2,198,208 - Pf1N1B4_1923 0.23 +0.4
2,198,375 + Pf1N1B4_1923 0.30 -0.6
2,198,375 + Pf1N1B4_1923 0.30 -1.2
2,198,375 + Pf1N1B4_1923 0.30 -0.6
2,198,375 + Pf1N1B4_1923 0.30 -0.9
2,198,375 + Pf1N1B4_1923 0.30 -0.2
2,198,375 + Pf1N1B4_1923 0.30 +1.4
2,198,375 + Pf1N1B4_1923 0.30 -1.2
2,198,376 - Pf1N1B4_1923 0.30 -1.0
2,198,376 - Pf1N1B4_1923 0.30 +0.4
2,198,376 - Pf1N1B4_1923 0.30 -0.2
2,198,376 - Pf1N1B4_1923 0.30 +0.4
2,198,376 - Pf1N1B4_1923 0.30 -0.0
2,198,376 - Pf1N1B4_1923 0.30 -1.0
2,198,376 - Pf1N1B4_1923 0.30 +0.1
2,198,378 + Pf1N1B4_1923 0.30 +0.7
2,198,379 - +1.4

Or see this region's nucleotide sequence