Experiment: D-Mannose (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Pf1N1B4_1920 and Pf1N1B4_1921 are separated by 10 nucleotides Pf1N1B4_1921 and Pf1N1B4_1922 are separated by 81 nucleotides Pf1N1B4_1922 and Pf1N1B4_1923 are separated by 181 nucleotides
Pf1N1B4_1920 - Glycyl-tRNA synthetase beta chain (EC 6.1.1.14), at 2,194,032 to 2,196,086
_1920
Pf1N1B4_1921 - D-glycero-D-manno-heptose 1,7-bisphosphate phosphatase (EC 3.1.1.-); Histidinol-phosphatase (EC 3.1.3.15), at 2,196,097 to 2,196,630
_1921
Pf1N1B4_1922 - 1-acyl-sn-glycerol-3-phosphate acyltransferase (EC 2.3.1.51), at 2,196,712 to 2,197,491
_1922
Pf1N1B4_1923 - Signal transduction histidine kinase, at 2,197,673 to 2,199,985
_1923
Position (kb)
2196
2197
2198 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2 at 2197.563 kb on + strand at 2197.582 kb on + strand at 2197.603 kb on + strand at 2197.603 kb on + strand at 2197.603 kb on + strand at 2197.604 kb on - strand at 2197.635 kb on + strand at 2197.638 kb on - strand at 2197.674 kb on + strand at 2197.685 kb on + strand at 2197.692 kb on - strand at 2197.692 kb on - strand at 2197.819 kb on + strand at 2197.898 kb on + strand at 2197.899 kb on - strand at 2197.914 kb on + strand, within Pf1N1B4_1923 at 2197.914 kb on + strand, within Pf1N1B4_1923 at 2197.914 kb on + strand, within Pf1N1B4_1923 at 2197.914 kb on + strand, within Pf1N1B4_1923 at 2197.914 kb on + strand, within Pf1N1B4_1923 at 2197.914 kb on + strand, within Pf1N1B4_1923 at 2197.915 kb on - strand, within Pf1N1B4_1923 at 2197.915 kb on - strand, within Pf1N1B4_1923 at 2197.915 kb on - strand, within Pf1N1B4_1923 at 2197.915 kb on - strand, within Pf1N1B4_1923 at 2197.915 kb on - strand, within Pf1N1B4_1923 at 2197.915 kb on - strand, within Pf1N1B4_1923 at 2197.915 kb on - strand, within Pf1N1B4_1923 at 2197.953 kb on + strand, within Pf1N1B4_1923 at 2197.953 kb on + strand, within Pf1N1B4_1923 at 2197.953 kb on + strand, within Pf1N1B4_1923 at 2197.953 kb on + strand, within Pf1N1B4_1923 at 2197.953 kb on + strand, within Pf1N1B4_1923 at 2197.953 kb on + strand, within Pf1N1B4_1923 at 2197.954 kb on - strand, within Pf1N1B4_1923 at 2197.954 kb on - strand, within Pf1N1B4_1923 at 2197.954 kb on - strand, within Pf1N1B4_1923 at 2197.954 kb on - strand, within Pf1N1B4_1923 at 2197.954 kb on - strand, within Pf1N1B4_1923 at 2197.954 kb on - strand, within Pf1N1B4_1923 at 2197.954 kb on - strand, within Pf1N1B4_1923 at 2198.099 kb on - strand, within Pf1N1B4_1923 at 2198.140 kb on - strand, within Pf1N1B4_1923 at 2198.140 kb on - strand, within Pf1N1B4_1923 at 2198.140 kb on - strand, within Pf1N1B4_1923 at 2198.201 kb on + strand, within Pf1N1B4_1923 at 2198.201 kb on + strand, within Pf1N1B4_1923 at 2198.201 kb on + strand, within Pf1N1B4_1923 at 2198.201 kb on + strand, within Pf1N1B4_1923 at 2198.201 kb on + strand, within Pf1N1B4_1923 at 2198.202 kb on - strand, within Pf1N1B4_1923 at 2198.202 kb on - strand, within Pf1N1B4_1923 at 2198.202 kb on - strand, within Pf1N1B4_1923 at 2198.202 kb on - strand, within Pf1N1B4_1923 at 2198.202 kb on - strand, within Pf1N1B4_1923 at 2198.202 kb on - strand, within Pf1N1B4_1923 at 2198.202 kb on - strand, within Pf1N1B4_1923 at 2198.202 kb on - strand, within Pf1N1B4_1923 at 2198.202 kb on - strand, within Pf1N1B4_1923 at 2198.207 kb on + strand, within Pf1N1B4_1923 at 2198.207 kb on + strand, within Pf1N1B4_1923 at 2198.207 kb on + strand, within Pf1N1B4_1923 at 2198.207 kb on + strand, within Pf1N1B4_1923 at 2198.207 kb on + strand, within Pf1N1B4_1923 at 2198.207 kb on + strand, within Pf1N1B4_1923 at 2198.208 kb on - strand, within Pf1N1B4_1923 at 2198.208 kb on - strand, within Pf1N1B4_1923 at 2198.208 kb on - strand, within Pf1N1B4_1923 at 2198.208 kb on - strand, within Pf1N1B4_1923 at 2198.208 kb on - strand, within Pf1N1B4_1923 at 2198.208 kb on - strand, within Pf1N1B4_1923 at 2198.375 kb on + strand, within Pf1N1B4_1923 at 2198.375 kb on + strand, within Pf1N1B4_1923 at 2198.375 kb on + strand, within Pf1N1B4_1923 at 2198.375 kb on + strand, within Pf1N1B4_1923 at 2198.375 kb on + strand, within Pf1N1B4_1923 at 2198.375 kb on + strand, within Pf1N1B4_1923 at 2198.375 kb on + strand, within Pf1N1B4_1923 at 2198.376 kb on - strand, within Pf1N1B4_1923 at 2198.376 kb on - strand, within Pf1N1B4_1923 at 2198.376 kb on - strand, within Pf1N1B4_1923 at 2198.376 kb on - strand, within Pf1N1B4_1923 at 2198.376 kb on - strand, within Pf1N1B4_1923 at 2198.376 kb on - strand, within Pf1N1B4_1923 at 2198.376 kb on - strand, within Pf1N1B4_1923 at 2198.378 kb on + strand, within Pf1N1B4_1923 at 2198.379 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction D-Mannose (C) remove 2,197,563 + -1.1 2,197,582 + -0.2 2,197,603 + -0.2 2,197,603 + +0.4 2,197,603 + +1.4 2,197,604 - -0.3 2,197,635 + -3.3 2,197,638 - -0.3 2,197,674 + +0.4 2,197,685 + -0.1 2,197,692 - -0.6 2,197,692 - +0.6 2,197,819 + -0.2 2,197,898 + -0.7 2,197,899 - -1.6 2,197,914 + Pf1N1B4_1923 0.10 +1.7 2,197,914 + Pf1N1B4_1923 0.10 -0.6 2,197,914 + Pf1N1B4_1923 0.10 +0.3 2,197,914 + Pf1N1B4_1923 0.10 -0.2 2,197,914 + Pf1N1B4_1923 0.10 -0.6 2,197,914 + Pf1N1B4_1923 0.10 +0.1 2,197,915 - Pf1N1B4_1923 0.10 +0.0 2,197,915 - Pf1N1B4_1923 0.10 +0.1 2,197,915 - Pf1N1B4_1923 0.10 -1.0 2,197,915 - Pf1N1B4_1923 0.10 +0.4 2,197,915 - Pf1N1B4_1923 0.10 -0.3 2,197,915 - Pf1N1B4_1923 0.10 +0.4 2,197,915 - Pf1N1B4_1923 0.10 -0.2 2,197,953 + Pf1N1B4_1923 0.12 -0.2 2,197,953 + Pf1N1B4_1923 0.12 +0.8 2,197,953 + Pf1N1B4_1923 0.12 +0.2 2,197,953 + Pf1N1B4_1923 0.12 -0.1 2,197,953 + Pf1N1B4_1923 0.12 +0.2 2,197,953 + Pf1N1B4_1923 0.12 +1.0 2,197,954 - Pf1N1B4_1923 0.12 -0.2 2,197,954 - Pf1N1B4_1923 0.12 +0.0 2,197,954 - Pf1N1B4_1923 0.12 -0.3 2,197,954 - Pf1N1B4_1923 0.12 +0.4 2,197,954 - Pf1N1B4_1923 0.12 +1.2 2,197,954 - Pf1N1B4_1923 0.12 +0.6 2,197,954 - Pf1N1B4_1923 0.12 -0.3 2,198,099 - Pf1N1B4_1923 0.18 -0.1 2,198,140 - Pf1N1B4_1923 0.20 +1.4 2,198,140 - Pf1N1B4_1923 0.20 +0.4 2,198,140 - Pf1N1B4_1923 0.20 -1.5 2,198,201 + Pf1N1B4_1923 0.23 +0.3 2,198,201 + Pf1N1B4_1923 0.23 -0.9 2,198,201 + Pf1N1B4_1923 0.23 -1.5 2,198,201 + Pf1N1B4_1923 0.23 +1.0 2,198,201 + Pf1N1B4_1923 0.23 +2.4 2,198,202 - Pf1N1B4_1923 0.23 -0.3 2,198,202 - Pf1N1B4_1923 0.23 -1.2 2,198,202 - Pf1N1B4_1923 0.23 +0.6 2,198,202 - Pf1N1B4_1923 0.23 -0.0 2,198,202 - Pf1N1B4_1923 0.23 -0.7 2,198,202 - Pf1N1B4_1923 0.23 +0.3 2,198,202 - Pf1N1B4_1923 0.23 -0.2 2,198,202 - Pf1N1B4_1923 0.23 +0.4 2,198,202 - Pf1N1B4_1923 0.23 +0.6 2,198,207 + Pf1N1B4_1923 0.23 -1.2 2,198,207 + Pf1N1B4_1923 0.23 -1.6 2,198,207 + Pf1N1B4_1923 0.23 -1.6 2,198,207 + Pf1N1B4_1923 0.23 +0.4 2,198,207 + Pf1N1B4_1923 0.23 -0.1 2,198,207 + Pf1N1B4_1923 0.23 -0.6 2,198,208 - Pf1N1B4_1923 0.23 +0.2 2,198,208 - Pf1N1B4_1923 0.23 +0.0 2,198,208 - Pf1N1B4_1923 0.23 +0.8 2,198,208 - Pf1N1B4_1923 0.23 -2.6 2,198,208 - Pf1N1B4_1923 0.23 +0.4 2,198,208 - Pf1N1B4_1923 0.23 +0.4 2,198,375 + Pf1N1B4_1923 0.30 -0.6 2,198,375 + Pf1N1B4_1923 0.30 -1.2 2,198,375 + Pf1N1B4_1923 0.30 -0.6 2,198,375 + Pf1N1B4_1923 0.30 -0.9 2,198,375 + Pf1N1B4_1923 0.30 -0.2 2,198,375 + Pf1N1B4_1923 0.30 +1.4 2,198,375 + Pf1N1B4_1923 0.30 -1.2 2,198,376 - Pf1N1B4_1923 0.30 -1.0 2,198,376 - Pf1N1B4_1923 0.30 +0.4 2,198,376 - Pf1N1B4_1923 0.30 -0.2 2,198,376 - Pf1N1B4_1923 0.30 +0.4 2,198,376 - Pf1N1B4_1923 0.30 -0.0 2,198,376 - Pf1N1B4_1923 0.30 -1.0 2,198,376 - Pf1N1B4_1923 0.30 +0.1 2,198,378 + Pf1N1B4_1923 0.30 +0.7 2,198,379 - +1.4
Or see this region's nucleotide sequence