Strain Fitness in Paraburkholderia bryophila 376MFSha3.1 around H281DRAFT_06516

Experiment: 2-Deoxy-D-ribonic lithium salt 10 mM (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntH281DRAFT_06515 and H281DRAFT_06516 overlap by 4 nucleotidesH281DRAFT_06516 and H281DRAFT_06517 are separated by 248 nucleotides H281DRAFT_06515: H281DRAFT_06515 - uncharacterized domain 1-containing protein, at 64,599 to 65,054 _06515 H281DRAFT_06516: H281DRAFT_06516 - transcriptional regulator, TetR family, at 65,051 to 65,644 _06516 H281DRAFT_06517: H281DRAFT_06517 - DNA-binding transcriptional regulator, LysR family, at 65,893 to 66,837 _06517 Position (kb) 65 66Strain fitness (log2 ratio) -2 -1 0 1at 64.176 kb on + strandat 64.176 kb on + strandat 64.262 kb on - strandat 64.360 kb on + strandat 64.361 kb on - strandat 64.369 kb on + strandat 64.486 kb on - strandat 64.486 kb on - strandat 64.646 kb on - strand, within H281DRAFT_06515at 64.647 kb on + strand, within H281DRAFT_06515at 64.750 kb on - strand, within H281DRAFT_06515at 64.788 kb on - strand, within H281DRAFT_06515at 64.790 kb on - strand, within H281DRAFT_06515at 64.888 kb on + strand, within H281DRAFT_06515at 64.889 kb on - strand, within H281DRAFT_06515at 64.889 kb on - strand, within H281DRAFT_06515at 65.035 kb on - strandat 65.109 kb on - strandat 65.679 kb on - strandat 65.901 kb on + strandat 66.234 kb on + strand, within H281DRAFT_06517at 66.444 kb on - strandat 66.444 kb on - strand, within H281DRAFT_06517

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Per-strain Table

Position Strand Gene LocusTag Fraction 2-Deoxy-D-ribonic lithium salt 10 mM (C)
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64,176 + -0.2
64,176 + -0.6
64,262 - +0.2
64,360 + +1.6
64,361 - -0.2
64,369 + -0.3
64,486 - +0.9
64,486 - -1.7
64,646 - H281DRAFT_06515 0.10 +0.4
64,647 + H281DRAFT_06515 0.11 -0.5
64,750 - H281DRAFT_06515 0.33 -0.3
64,788 - H281DRAFT_06515 0.41 -0.2
64,790 - H281DRAFT_06515 0.42 -0.0
64,888 + H281DRAFT_06515 0.63 +0.6
64,889 - H281DRAFT_06515 0.64 -0.3
64,889 - H281DRAFT_06515 0.64 +0.6
65,035 - +1.2
65,109 - -2.4
65,679 - +0.5
65,901 + +0.5
66,234 + H281DRAFT_06517 0.36 -0.4
66,444 - +0.6
66,444 - H281DRAFT_06517 0.58 -1.4

Or see this region's nucleotide sequence