Strain Fitness in Paraburkholderia bryophila 376MFSha3.1 around H281DRAFT_06018

Experiment: 2-Deoxy-D-ribonic lithium salt 10 mM (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntH281DRAFT_06016 and H281DRAFT_06017 overlap by 4 nucleotidesH281DRAFT_06017 and H281DRAFT_06018 are separated by 287 nucleotidesH281DRAFT_06018 and H281DRAFT_06019 are separated by 160 nucleotides H281DRAFT_06016: H281DRAFT_06016 - farnesyl-diphosphate synthase, at 19,993 to 20,874 _06016 H281DRAFT_06017: H281DRAFT_06017 - Exodeoxyribonuclease VII small subunit, at 20,871 to 21,179 _06017 H281DRAFT_06018: H281DRAFT_06018 - choline monooxygenase, at 21,467 to 22,573 _06018 H281DRAFT_06019: H281DRAFT_06019 - thiosulfate/3-mercaptopyruvate sulfurtransferase, at 22,734 to 23,603 _06019 Position (kb) 21 22 23Strain fitness (log2 ratio) -2 -1 0 1 2 3at 20.573 kb on - strand, within H281DRAFT_06016at 20.875 kb on - strandat 20.875 kb on - strandat 20.875 kb on - strandat 20.875 kb on - strandat 21.104 kb on - strand, within H281DRAFT_06017at 21.184 kb on - strandat 21.363 kb on + strandat 21.363 kb on + strandat 21.363 kb on + strandat 21.390 kb on + strandat 21.391 kb on - strandat 21.393 kb on - strandat 21.549 kb on + strandat 21.550 kb on - strandat 21.590 kb on + strand, within H281DRAFT_06018at 21.630 kb on - strand, within H281DRAFT_06018at 21.630 kb on - strand, within H281DRAFT_06018at 21.761 kb on - strand, within H281DRAFT_06018at 21.761 kb on - strand, within H281DRAFT_06018at 21.788 kb on + strand, within H281DRAFT_06018at 21.788 kb on + strand, within H281DRAFT_06018at 21.789 kb on - strand, within H281DRAFT_06018at 21.789 kb on - strand, within H281DRAFT_06018at 21.789 kb on - strand, within H281DRAFT_06018at 21.999 kb on - strand, within H281DRAFT_06018at 21.999 kb on - strand, within H281DRAFT_06018at 21.999 kb on - strand, within H281DRAFT_06018at 21.999 kb on - strand, within H281DRAFT_06018at 22.025 kb on + strand, within H281DRAFT_06018at 22.026 kb on - strand, within H281DRAFT_06018at 22.037 kb on + strand, within H281DRAFT_06018at 22.038 kb on - strand, within H281DRAFT_06018at 22.116 kb on - strand, within H281DRAFT_06018at 22.116 kb on - strand, within H281DRAFT_06018at 22.172 kb on + strand, within H281DRAFT_06018at 22.247 kb on + strand, within H281DRAFT_06018at 22.247 kb on + strand, within H281DRAFT_06018at 22.247 kb on + strand, within H281DRAFT_06018at 22.248 kb on - strand, within H281DRAFT_06018at 22.248 kb on - strand, within H281DRAFT_06018at 22.250 kb on + strand, within H281DRAFT_06018at 22.251 kb on - strand, within H281DRAFT_06018at 22.346 kb on + strand, within H281DRAFT_06018at 22.346 kb on + strand, within H281DRAFT_06018at 22.346 kb on + strand, within H281DRAFT_06018at 22.347 kb on - strand, within H281DRAFT_06018at 22.347 kb on - strand, within H281DRAFT_06018at 22.347 kb on - strand, within H281DRAFT_06018at 22.406 kb on + strand, within H281DRAFT_06018at 22.406 kb on + strand, within H281DRAFT_06018at 22.406 kb on + strand, within H281DRAFT_06018at 22.407 kb on - strand, within H281DRAFT_06018at 22.407 kb on - strand, within H281DRAFT_06018at 22.407 kb on - strand, within H281DRAFT_06018at 22.650 kb on - strandat 22.654 kb on + strandat 22.654 kb on + strandat 22.655 kb on - strandat 22.655 kb on - strandat 22.749 kb on + strandat 22.749 kb on + strandat 22.750 kb on - strandat 22.750 kb on - strandat 22.896 kb on + strand, within H281DRAFT_06019at 22.896 kb on + strand, within H281DRAFT_06019at 22.896 kb on + strand, within H281DRAFT_06019at 22.937 kb on + strand, within H281DRAFT_06019at 23.049 kb on + strand, within H281DRAFT_06019at 23.049 kb on + strandat 23.050 kb on - strand, within H281DRAFT_06019at 23.249 kb on + strand, within H281DRAFT_06019at 23.249 kb on + strandat 23.399 kb on + strand, within H281DRAFT_06019at 23.400 kb on - strand, within H281DRAFT_06019at 23.425 kb on + strand, within H281DRAFT_06019

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Per-strain Table

Position Strand Gene LocusTag Fraction 2-Deoxy-D-ribonic lithium salt 10 mM (C)
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20,573 - H281DRAFT_06016 0.66 -2.6
20,875 - +0.1
20,875 - +0.9
20,875 - -0.7
20,875 - +0.6
21,104 - H281DRAFT_06017 0.75 +0.2
21,184 - +0.9
21,363 + -0.3
21,363 + -0.3
21,363 + -0.2
21,390 + +0.0
21,391 - +1.3
21,393 - +1.4
21,549 + -0.4
21,550 - -0.5
21,590 + H281DRAFT_06018 0.11 +1.1
21,630 - H281DRAFT_06018 0.15 +1.3
21,630 - H281DRAFT_06018 0.15 +2.6
21,761 - H281DRAFT_06018 0.27 +1.7
21,761 - H281DRAFT_06018 0.27 +0.6
21,788 + H281DRAFT_06018 0.29 +1.3
21,788 + H281DRAFT_06018 0.29 -0.1
21,789 - H281DRAFT_06018 0.29 -0.3
21,789 - H281DRAFT_06018 0.29 +1.1
21,789 - H281DRAFT_06018 0.29 +1.1
21,999 - H281DRAFT_06018 0.48 +1.5
21,999 - H281DRAFT_06018 0.48 +0.2
21,999 - H281DRAFT_06018 0.48 +0.5
21,999 - H281DRAFT_06018 0.48 -0.1
22,025 + H281DRAFT_06018 0.50 -1.1
22,026 - H281DRAFT_06018 0.50 +0.9
22,037 + H281DRAFT_06018 0.51 +0.3
22,038 - H281DRAFT_06018 0.52 +0.4
22,116 - H281DRAFT_06018 0.59 -0.3
22,116 - H281DRAFT_06018 0.59 -0.1
22,172 + H281DRAFT_06018 0.64 +0.8
22,247 + H281DRAFT_06018 0.70 +1.3
22,247 + H281DRAFT_06018 0.70 +0.9
22,247 + H281DRAFT_06018 0.70 +0.9
22,248 - H281DRAFT_06018 0.71 +0.6
22,248 - H281DRAFT_06018 0.71 -0.7
22,250 + H281DRAFT_06018 0.71 +1.2
22,251 - H281DRAFT_06018 0.71 +0.5
22,346 + H281DRAFT_06018 0.79 +0.5
22,346 + H281DRAFT_06018 0.79 +1.1
22,346 + H281DRAFT_06018 0.79 +0.6
22,347 - H281DRAFT_06018 0.79 +1.0
22,347 - H281DRAFT_06018 0.79 +0.6
22,347 - H281DRAFT_06018 0.79 +1.2
22,406 + H281DRAFT_06018 0.85 +0.2
22,406 + H281DRAFT_06018 0.85 +1.2
22,406 + H281DRAFT_06018 0.85 +0.4
22,407 - H281DRAFT_06018 0.85 +1.0
22,407 - H281DRAFT_06018 0.85 +1.9
22,407 - H281DRAFT_06018 0.85 +0.9
22,650 - +0.1
22,654 + -2.1
22,654 + -0.2
22,655 - +0.4
22,655 - -0.2
22,749 + -0.7
22,749 + -0.7
22,750 - +0.6
22,750 - +0.5
22,896 + H281DRAFT_06019 0.19 -0.1
22,896 + H281DRAFT_06019 0.19 +0.7
22,896 + H281DRAFT_06019 0.19 -0.4
22,937 + H281DRAFT_06019 0.23 -0.2
23,049 + H281DRAFT_06019 0.36 -0.5
23,049 + +0.9
23,050 - H281DRAFT_06019 0.36 -0.3
23,249 + H281DRAFT_06019 0.59 +0.4
23,249 + +2.9
23,399 + H281DRAFT_06019 0.76 +0.2
23,400 - H281DRAFT_06019 0.77 -0.7
23,425 + H281DRAFT_06019 0.79 +0.2

Or see this region's nucleotide sequence