Strain Fitness in Paraburkholderia bryophila 376MFSha3.1 around H281DRAFT_05944

Experiment: 2-Deoxy-D-ribonic lithium salt 10 mM (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntH281DRAFT_05943 and H281DRAFT_05944 are separated by 79 nucleotidesH281DRAFT_05944 and H281DRAFT_05945 are separated by 393 nucleotides H281DRAFT_05943: H281DRAFT_05943 - Permease of the drug/metabolite transporter (DMT) superfamily, at 82,724 to 83,593 _05943 H281DRAFT_05944: H281DRAFT_05944 - DNA-binding transcriptional regulator, FadR family, at 83,673 to 84,374 _05944 H281DRAFT_05945: H281DRAFT_05945 - monosaccharide ABC transporter substrate-binding protein, CUT2 family, at 84,768 to 85,805 _05945 Position (kb) 83 84 85Strain fitness (log2 ratio) -1 0 1 2at 82.786 kb on - strandat 83.004 kb on + strand, within H281DRAFT_05943at 83.274 kb on + strand, within H281DRAFT_05943at 83.846 kb on + strand, within H281DRAFT_05944at 84.281 kb on - strand, within H281DRAFT_05944at 84.285 kb on - strand, within H281DRAFT_05944at 84.329 kb on - strandat 84.432 kb on - strandat 84.861 kb on - strandat 84.993 kb on - strand, within H281DRAFT_05945at 84.993 kb on - strand, within H281DRAFT_05945at 85.225 kb on - strand, within H281DRAFT_05945

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Per-strain Table

Position Strand Gene LocusTag Fraction 2-Deoxy-D-ribonic lithium salt 10 mM (C)
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82,786 - +0.9
83,004 + H281DRAFT_05943 0.32 -0.6
83,274 + H281DRAFT_05943 0.63 -1.7
83,846 + H281DRAFT_05944 0.25 +0.5
84,281 - H281DRAFT_05944 0.87 +1.5
84,285 - H281DRAFT_05944 0.87 -1.5
84,329 - -0.4
84,432 - -0.1
84,861 - +0.1
84,993 - H281DRAFT_05945 0.22 +0.8
84,993 - H281DRAFT_05945 0.22 +0.1
85,225 - H281DRAFT_05945 0.44 +1.9

Or see this region's nucleotide sequence