Strain Fitness in Paraburkholderia bryophila 376MFSha3.1 around H281DRAFT_05935

Experiment: 2-Deoxy-D-ribonic lithium salt 10 mM (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntH281DRAFT_05934 and H281DRAFT_05935 are separated by 285 nucleotidesH281DRAFT_05935 and H281DRAFT_05936 are separated by 132 nucleotides H281DRAFT_05934: H281DRAFT_05934 - Uncharacterized conserved protein YbjT, contains NAD(P)-binding and DUF2867 domains, at 72,066 to 72,935 _05934 H281DRAFT_05935: H281DRAFT_05935 - glutamine--fructose-6-phosphate transaminase, at 73,221 to 75,050 _05935 H281DRAFT_05936: H281DRAFT_05936 - hypothetical protein, at 75,183 to 76,709 _05936 Position (kb) 73 74 75 76Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 72.622 kb on - strand, within H281DRAFT_05934at 72.736 kb on - strand, within H281DRAFT_05934at 72.931 kb on + strandat 73.174 kb on + strandat 73.175 kb on - strandat 73.175 kb on - strandat 73.234 kb on + strandat 73.434 kb on - strand, within H281DRAFT_05935at 73.561 kb on + strandat 73.792 kb on - strand, within H281DRAFT_05935at 74.060 kb on - strand, within H281DRAFT_05935at 74.241 kb on - strand, within H281DRAFT_05935at 74.245 kb on + strand, within H281DRAFT_05935at 74.699 kb on - strand, within H281DRAFT_05935at 74.773 kb on + strandat 74.854 kb on - strand, within H281DRAFT_05935at 74.905 kb on + strandat 75.193 kb on - strandat 75.474 kb on + strand, within H281DRAFT_05936at 75.633 kb on + strand, within H281DRAFT_05936at 75.790 kb on - strand, within H281DRAFT_05936

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Per-strain Table

Position Strand Gene LocusTag Fraction 2-Deoxy-D-ribonic lithium salt 10 mM (C)
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72,622 - H281DRAFT_05934 0.64 -0.1
72,736 - H281DRAFT_05934 0.77 -0.0
72,931 + -0.1
73,174 + +0.6
73,175 - -0.2
73,175 - +0.7
73,234 + +2.1
73,434 - H281DRAFT_05935 0.12 +1.1
73,561 + +1.5
73,792 - H281DRAFT_05935 0.31 -2.8
74,060 - H281DRAFT_05935 0.46 -0.5
74,241 - H281DRAFT_05935 0.56 +0.8
74,245 + H281DRAFT_05935 0.56 +1.1
74,699 - H281DRAFT_05935 0.81 +0.2
74,773 + +2.1
74,854 - H281DRAFT_05935 0.89 +0.1
74,905 + -0.2
75,193 - +1.5
75,474 + H281DRAFT_05936 0.19 -0.4
75,633 + H281DRAFT_05936 0.29 +0.6
75,790 - H281DRAFT_05936 0.40 -1.0

Or see this region's nucleotide sequence