Strain Fitness in Paraburkholderia bryophila 376MFSha3.1 around H281DRAFT_05761

Experiment: 2-Deoxy-D-ribonic lithium salt 10 mM (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntH281DRAFT_05759 and H281DRAFT_05760 are separated by 94 nucleotidesH281DRAFT_05760 and H281DRAFT_05761 are separated by 153 nucleotidesH281DRAFT_05761 and H281DRAFT_05762 are separated by 215 nucleotidesH281DRAFT_05762 and H281DRAFT_05763 are separated by 102 nucleotides H281DRAFT_05759: H281DRAFT_05759 - flagella synthesis protein FlgN, at 33,449 to 33,895 _05759 H281DRAFT_05760: H281DRAFT_05760 - anti-sigma-28 factor, FlgM family, at 33,990 to 34,343 _05760 H281DRAFT_05761: H281DRAFT_05761 - flagella basal body P-ring formation protein FlgA, at 34,497 to 36,059 _05761 H281DRAFT_05762: H281DRAFT_05762 - flagellar basal-body rod protein FlgB, at 36,275 to 36,766 _05762 H281DRAFT_05763: H281DRAFT_05763 - flagellar basal-body rod protein FlgC, at 36,869 to 37,294 _05763 Position (kb) 34 35 36 37Strain fitness (log2 ratio) -2 -1 0 1 2 3at 33.546 kb on + strand, within H281DRAFT_05759at 33.547 kb on - strand, within H281DRAFT_05759at 33.858 kb on + strandat 33.975 kb on - strandat 33.991 kb on + strandat 33.991 kb on + strandat 33.992 kb on - strandat 33.992 kb on - strandat 34.654 kb on - strand, within H281DRAFT_05761at 34.695 kb on - strand, within H281DRAFT_05761at 34.864 kb on + strand, within H281DRAFT_05761at 34.867 kb on + strand, within H281DRAFT_05761at 34.867 kb on + strand, within H281DRAFT_05761at 34.867 kb on + strand, within H281DRAFT_05761at 34.867 kb on + strand, within H281DRAFT_05761at 34.867 kb on + strand, within H281DRAFT_05761at 34.867 kb on + strand, within H281DRAFT_05761at 34.867 kb on + strand, within H281DRAFT_05761at 34.867 kb on + strand, within H281DRAFT_05761at 34.868 kb on - strand, within H281DRAFT_05761at 34.868 kb on - strand, within H281DRAFT_05761at 34.901 kb on - strand, within H281DRAFT_05761at 34.901 kb on - strand, within H281DRAFT_05761at 35.795 kb on + strand, within H281DRAFT_05761at 35.796 kb on - strand, within H281DRAFT_05761at 35.796 kb on - strand, within H281DRAFT_05761at 35.813 kb on + strand, within H281DRAFT_05761at 36.086 kb on - strandat 36.099 kb on + strandat 36.099 kb on + strandat 36.099 kb on + strandat 36.100 kb on - strandat 36.131 kb on - strandat 36.151 kb on - strandat 36.151 kb on - strandat 36.183 kb on - strandat 36.274 kb on + strandat 36.275 kb on - strandat 36.275 kb on - strandat 36.275 kb on - strandat 36.387 kb on - strand, within H281DRAFT_05762at 36.458 kb on - strand, within H281DRAFT_05762at 36.652 kb on + strand, within H281DRAFT_05762at 36.801 kb on + strandat 36.827 kb on + strandat 36.888 kb on + strandat 36.888 kb on + strandat 36.888 kb on + strandat 36.888 kb on + strandat 36.889 kb on - strandat 36.889 kb on - strandat 36.889 kb on - strandat 36.889 kb on - strandat 36.889 kb on - strandat 36.889 kb on - strandat 36.889 kb on - strandat 36.995 kb on + strand, within H281DRAFT_05763at 36.996 kb on - strand, within H281DRAFT_05763at 36.996 kb on - strand, within H281DRAFT_05763at 36.996 kb on - strand, within H281DRAFT_05763

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Per-strain Table

Position Strand Gene LocusTag Fraction 2-Deoxy-D-ribonic lithium salt 10 mM (C)
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33,546 + H281DRAFT_05759 0.22 -0.5
33,547 - H281DRAFT_05759 0.22 -1.2
33,858 + -2.4
33,975 - -1.5
33,991 + +0.2
33,991 + +0.3
33,992 - +0.9
33,992 - -0.3
34,654 - H281DRAFT_05761 0.10 +0.4
34,695 - H281DRAFT_05761 0.13 +1.4
34,864 + H281DRAFT_05761 0.23 +0.4
34,867 + H281DRAFT_05761 0.24 -0.0
34,867 + H281DRAFT_05761 0.24 +0.5
34,867 + H281DRAFT_05761 0.24 +1.3
34,867 + H281DRAFT_05761 0.24 -0.7
34,867 + H281DRAFT_05761 0.24 +0.1
34,867 + H281DRAFT_05761 0.24 +0.8
34,867 + H281DRAFT_05761 0.24 +0.8
34,867 + H281DRAFT_05761 0.24 +0.4
34,868 - H281DRAFT_05761 0.24 +0.6
34,868 - H281DRAFT_05761 0.24 +1.0
34,901 - H281DRAFT_05761 0.26 +3.6
34,901 - H281DRAFT_05761 0.26 +0.3
35,795 + H281DRAFT_05761 0.83 +0.6
35,796 - H281DRAFT_05761 0.83 +0.4
35,796 - H281DRAFT_05761 0.83 +0.8
35,813 + H281DRAFT_05761 0.84 +0.5
36,086 - +1.4
36,099 + -2.0
36,099 + -2.2
36,099 + -1.3
36,100 - +0.5
36,131 - +0.5
36,151 - -0.1
36,151 - +0.2
36,183 - -0.0
36,274 + -0.5
36,275 - +1.3
36,275 - +1.0
36,275 - +1.5
36,387 - H281DRAFT_05762 0.23 +1.1
36,458 - H281DRAFT_05762 0.37 +0.1
36,652 + H281DRAFT_05762 0.77 +0.3
36,801 + -0.2
36,827 + +1.9
36,888 + +1.3
36,888 + +0.6
36,888 + +1.1
36,888 + +0.2
36,889 - +0.5
36,889 - +0.8
36,889 - +0.3
36,889 - +0.6
36,889 - +0.7
36,889 - +0.3
36,889 - +0.8
36,995 + H281DRAFT_05763 0.30 +0.4
36,996 - H281DRAFT_05763 0.30 +0.6
36,996 - H281DRAFT_05763 0.30 +1.2
36,996 - H281DRAFT_05763 0.30 +0.0

Or see this region's nucleotide sequence