Strain Fitness in Paraburkholderia bryophila 376MFSha3.1 around H281DRAFT_05724

Experiment: 2-Deoxy-D-ribonic lithium salt 10 mM (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntH281DRAFT_05723 and H281DRAFT_05724 are separated by 121 nucleotidesH281DRAFT_05724 and H281DRAFT_05725 are separated by 131 nucleotides H281DRAFT_05723: H281DRAFT_05723 - bifunctional thiolase PaaJ: 3-oxo-5,6-didehydrosuberyl-CoA thiolase (EC 2.3.1.223); 3-oxoadipyl-CoA thiolase (EC 2.3.1.174) (from data), at 141,891 to 143,093 _05723 H281DRAFT_05724: H281DRAFT_05724 - 3-oxo-5,6-didehydrosuberyl-CoA semialdehyde dehydrogenase PaaZ (EC:1.2.1.91) (from data), at 143,215 to 144,915 _05724 H281DRAFT_05725: H281DRAFT_05725 - 2,3-dehydroadipyl-CoA hydratase / enoyl-CoA hydratase (EC 4.2.1.17) (from data), at 145,047 to 145,823 _05725 Position (kb) 143 144 145Strain fitness (log2 ratio) -2 -1 0 1 2 3at 142.276 kb on + strand, within H281DRAFT_05723at 142.276 kb on + strand, within H281DRAFT_05723at 142.353 kb on + strand, within H281DRAFT_05723at 142.354 kb on - strand, within H281DRAFT_05723at 142.374 kb on + strand, within H281DRAFT_05723at 142.374 kb on + strand, within H281DRAFT_05723at 142.374 kb on + strand, within H281DRAFT_05723at 142.375 kb on - strand, within H281DRAFT_05723at 142.375 kb on - strand, within H281DRAFT_05723at 142.375 kb on - strand, within H281DRAFT_05723at 142.375 kb on - strand, within H281DRAFT_05723at 142.375 kb on - strand, within H281DRAFT_05723at 142.837 kb on - strand, within H281DRAFT_05723at 142.933 kb on + strand, within H281DRAFT_05723at 142.933 kb on + strand, within H281DRAFT_05723at 142.934 kb on - strand, within H281DRAFT_05723at 142.934 kb on - strand, within H281DRAFT_05723at 142.934 kb on - strand, within H281DRAFT_05723at 142.974 kb on - strandat 143.078 kb on + strandat 143.078 kb on + strandat 143.080 kb on + strandat 143.081 kb on - strandat 143.094 kb on - strandat 143.094 kb on - strandat 143.105 kb on + strandat 143.144 kb on + strandat 143.144 kb on + strandat 143.145 kb on - strandat 143.145 kb on - strandat 143.145 kb on - strandat 143.145 kb on - strandat 143.145 kb on - strandat 143.145 kb on - strandat 143.145 kb on - strandat 143.145 kb on - strandat 143.145 kb on - strandat 143.184 kb on + strandat 143.185 kb on - strandat 143.185 kb on - strandat 143.207 kb on + strandat 143.207 kb on + strandat 143.225 kb on - strandat 143.401 kb on + strand, within H281DRAFT_05724at 143.867 kb on + strand, within H281DRAFT_05724at 143.867 kb on + strand, within H281DRAFT_05724at 143.867 kb on + strand, within H281DRAFT_05724at 143.867 kb on + strand, within H281DRAFT_05724at 143.867 kb on + strand, within H281DRAFT_05724at 143.996 kb on + strand, within H281DRAFT_05724at 143.996 kb on + strand, within H281DRAFT_05724at 144.127 kb on + strand, within H281DRAFT_05724at 144.166 kb on + strand, within H281DRAFT_05724at 144.166 kb on + strand, within H281DRAFT_05724at 144.431 kb on + strand, within H281DRAFT_05724at 144.431 kb on + strand, within H281DRAFT_05724at 144.522 kb on + strand, within H281DRAFT_05724at 144.522 kb on + strand, within H281DRAFT_05724at 144.522 kb on + strand, within H281DRAFT_05724at 144.660 kb on + strand, within H281DRAFT_05724at 144.697 kb on + strand, within H281DRAFT_05724at 144.698 kb on - strand, within H281DRAFT_05724at 144.933 kb on - strandat 144.954 kb on - strandat 144.954 kb on - strandat 144.957 kb on - strandat 144.957 kb on - strandat 144.993 kb on - strandat 144.996 kb on - strandat 144.996 kb on - strandat 144.996 kb on - strandat 144.996 kb on - strandat 144.996 kb on - strandat 144.996 kb on - strandat 145.036 kb on + strandat 145.036 kb on + strandat 145.037 kb on - strandat 145.053 kb on + strandat 145.264 kb on - strand, within H281DRAFT_05725at 145.264 kb on - strand, within H281DRAFT_05725at 145.269 kb on + strand, within H281DRAFT_05725at 145.269 kb on + strand, within H281DRAFT_05725at 145.269 kb on + strand, within H281DRAFT_05725at 145.269 kb on + strand, within H281DRAFT_05725at 145.269 kb on + strand, within H281DRAFT_05725at 145.269 kb on + strand, within H281DRAFT_05725at 145.269 kb on + strandat 145.270 kb on - strand, within H281DRAFT_05725at 145.270 kb on - strand, within H281DRAFT_05725at 145.271 kb on + strand, within H281DRAFT_05725at 145.272 kb on - strand, within H281DRAFT_05725at 145.272 kb on - strand, within H281DRAFT_05725at 145.281 kb on + strand, within H281DRAFT_05725at 145.282 kb on - strand, within H281DRAFT_05725at 145.282 kb on - strand, within H281DRAFT_05725at 145.282 kb on - strand, within H281DRAFT_05725at 145.282 kb on - strand, within H281DRAFT_05725at 145.293 kb on + strandat 145.293 kb on + strand, within H281DRAFT_05725at 145.294 kb on - strand, within H281DRAFT_05725at 145.294 kb on - strand, within H281DRAFT_05725at 145.294 kb on - strand, within H281DRAFT_05725at 145.304 kb on + strand, within H281DRAFT_05725at 145.304 kb on + strand, within H281DRAFT_05725at 145.305 kb on - strand, within H281DRAFT_05725at 145.331 kb on + strand, within H281DRAFT_05725at 145.331 kb on + strand, within H281DRAFT_05725at 145.332 kb on - strand, within H281DRAFT_05725at 145.509 kb on - strand, within H281DRAFT_05725at 145.542 kb on - strand, within H281DRAFT_05725at 145.542 kb on - strand, within H281DRAFT_05725at 145.635 kb on - strand, within H281DRAFT_05725at 145.824 kb on + strandat 145.824 kb on + strandat 145.824 kb on + strandat 145.824 kb on + strandat 145.839 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction 2-Deoxy-D-ribonic lithium salt 10 mM (C)
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142,276 + H281DRAFT_05723 0.32 +0.1
142,276 + H281DRAFT_05723 0.32 +0.2
142,353 + H281DRAFT_05723 0.38 -1.4
142,354 - H281DRAFT_05723 0.38 -0.2
142,374 + H281DRAFT_05723 0.40 +0.0
142,374 + H281DRAFT_05723 0.40 -0.4
142,374 + H281DRAFT_05723 0.40 -0.2
142,375 - H281DRAFT_05723 0.40 +1.0
142,375 - H281DRAFT_05723 0.40 +0.1
142,375 - H281DRAFT_05723 0.40 -0.2
142,375 - H281DRAFT_05723 0.40 +0.8
142,375 - H281DRAFT_05723 0.40 -0.2
142,837 - H281DRAFT_05723 0.79 -0.3
142,933 + H281DRAFT_05723 0.87 -0.8
142,933 + H281DRAFT_05723 0.87 +0.4
142,934 - H281DRAFT_05723 0.87 +0.5
142,934 - H281DRAFT_05723 0.87 +2.0
142,934 - H281DRAFT_05723 0.87 +0.8
142,974 - +0.6
143,078 + -1.0
143,078 + +1.7
143,080 + -1.0
143,081 - -0.9
143,094 - +0.2
143,094 - +2.0
143,105 + +0.0
143,144 + +1.2
143,144 + +0.2
143,145 - +0.1
143,145 - +0.3
143,145 - +0.4
143,145 - -0.5
143,145 - +0.6
143,145 - -0.1
143,145 - -0.8
143,145 - +0.2
143,145 - +0.3
143,184 + +0.8
143,185 - +0.4
143,185 - +0.7
143,207 + -0.4
143,207 + +0.6
143,225 - -1.0
143,401 + H281DRAFT_05724 0.11 +1.0
143,867 + H281DRAFT_05724 0.38 +0.0
143,867 + H281DRAFT_05724 0.38 -0.6
143,867 + H281DRAFT_05724 0.38 +2.0
143,867 + H281DRAFT_05724 0.38 +0.9
143,867 + H281DRAFT_05724 0.38 +0.3
143,996 + H281DRAFT_05724 0.46 +0.1
143,996 + H281DRAFT_05724 0.46 -1.3
144,127 + H281DRAFT_05724 0.54 -1.8
144,166 + H281DRAFT_05724 0.56 -0.0
144,166 + H281DRAFT_05724 0.56 +0.6
144,431 + H281DRAFT_05724 0.71 +0.0
144,431 + H281DRAFT_05724 0.71 +1.7
144,522 + H281DRAFT_05724 0.77 +0.6
144,522 + H281DRAFT_05724 0.77 +0.5
144,522 + H281DRAFT_05724 0.77 +1.2
144,660 + H281DRAFT_05724 0.85 +0.5
144,697 + H281DRAFT_05724 0.87 +1.1
144,698 - H281DRAFT_05724 0.87 +1.1
144,933 - +0.8
144,954 - +1.4
144,954 - +1.0
144,957 - -0.2
144,957 - +0.4
144,993 - -0.8
144,996 - +0.6
144,996 - -0.6
144,996 - +0.2
144,996 - -0.1
144,996 - -1.3
144,996 - +0.3
145,036 + +0.3
145,036 + -0.0
145,037 - +0.0
145,053 + -0.3
145,264 - H281DRAFT_05725 0.28 -0.3
145,264 - H281DRAFT_05725 0.28 -0.5
145,269 + H281DRAFT_05725 0.29 +0.0
145,269 + H281DRAFT_05725 0.29 -1.3
145,269 + H281DRAFT_05725 0.29 +1.0
145,269 + H281DRAFT_05725 0.29 +0.2
145,269 + H281DRAFT_05725 0.29 -0.7
145,269 + H281DRAFT_05725 0.29 +3.0
145,269 + +3.0
145,270 - H281DRAFT_05725 0.29 -0.1
145,270 - H281DRAFT_05725 0.29 +0.5
145,271 + H281DRAFT_05725 0.29 +0.2
145,272 - H281DRAFT_05725 0.29 +0.6
145,272 - H281DRAFT_05725 0.29 -0.4
145,281 + H281DRAFT_05725 0.30 +0.1
145,282 - H281DRAFT_05725 0.30 -0.7
145,282 - H281DRAFT_05725 0.30 -0.1
145,282 - H281DRAFT_05725 0.30 +0.4
145,282 - H281DRAFT_05725 0.30 +0.6
145,293 + -0.0
145,293 + H281DRAFT_05725 0.32 -0.1
145,294 - H281DRAFT_05725 0.32 +0.1
145,294 - H281DRAFT_05725 0.32 +0.4
145,294 - H281DRAFT_05725 0.32 +1.1
145,304 + H281DRAFT_05725 0.33 -2.0
145,304 + H281DRAFT_05725 0.33 -0.5
145,305 - H281DRAFT_05725 0.33 +0.3
145,331 + H281DRAFT_05725 0.37 -0.5
145,331 + H281DRAFT_05725 0.37 -0.9
145,332 - H281DRAFT_05725 0.37 -0.6
145,509 - H281DRAFT_05725 0.59 -0.7
145,542 - H281DRAFT_05725 0.64 +0.8
145,542 - H281DRAFT_05725 0.64 +0.0
145,635 - H281DRAFT_05725 0.76 -0.4
145,824 + +0.4
145,824 + -0.1
145,824 + +1.1
145,824 + -0.4
145,839 - +0.0

Or see this region's nucleotide sequence