Strain Fitness in Paraburkholderia bryophila 376MFSha3.1 around H281DRAFT_05190

Experiment: 2-Deoxy-D-ribonic lithium salt 10 mM (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntH281DRAFT_05189 and H281DRAFT_05190 are separated by 184 nucleotidesH281DRAFT_05190 and H281DRAFT_05191 are separated by 107 nucleotides H281DRAFT_05189: H281DRAFT_05189 - Predicted flavoprotein CzcO associated with the cation diffusion facilitator CzcD, at 145,050 to 146,549 _05189 H281DRAFT_05190: H281DRAFT_05190 - transcriptional regulator, TetR family, at 146,734 to 147,468 _05190 H281DRAFT_05191: H281DRAFT_05191 - Tetratricopeptide repeat-containing protein, at 147,576 to 148,811 _05191 Position (kb) 146 147 148Strain fitness (log2 ratio) -1 0 1at 145.816 kb on - strand, within H281DRAFT_05189at 145.816 kb on - strand, within H281DRAFT_05189at 146.230 kb on + strand, within H281DRAFT_05189at 146.231 kb on - strand, within H281DRAFT_05189at 146.246 kb on - strand, within H281DRAFT_05189at 146.419 kb on + strandat 146.435 kb on + strandat 146.436 kb on - strandat 146.681 kb on - strandat 146.681 kb on - strandat 146.681 kb on - strandat 146.690 kb on - strandat 146.914 kb on + strand, within H281DRAFT_05190at 146.914 kb on + strand, within H281DRAFT_05190at 147.522 kb on + strandat 147.523 kb on - strandat 147.577 kb on + strandat 148.092 kb on + strand, within H281DRAFT_05191at 148.167 kb on + strand, within H281DRAFT_05191

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Per-strain Table

Position Strand Gene LocusTag Fraction 2-Deoxy-D-ribonic lithium salt 10 mM (C)
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145,816 - H281DRAFT_05189 0.51 -0.1
145,816 - H281DRAFT_05189 0.51 -1.2
146,230 + H281DRAFT_05189 0.79 +0.4
146,231 - H281DRAFT_05189 0.79 -0.0
146,246 - H281DRAFT_05189 0.80 -0.1
146,419 + +0.1
146,435 + +0.1
146,436 - -0.4
146,681 - +0.4
146,681 - +0.4
146,681 - -0.0
146,690 - +0.9
146,914 + H281DRAFT_05190 0.24 +0.5
146,914 + H281DRAFT_05190 0.24 +0.3
147,522 + -0.8
147,523 - +1.0
147,577 + -0.6
148,092 + H281DRAFT_05191 0.42 +0.3
148,167 + H281DRAFT_05191 0.48 +0.4

Or see this region's nucleotide sequence