Strain Fitness in Paraburkholderia bryophila 376MFSha3.1 around H281DRAFT_04990

Experiment: 2-Deoxy-D-ribonic lithium salt 10 mM (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntH281DRAFT_04989 and H281DRAFT_04990 are separated by 43 nucleotidesH281DRAFT_04990 and H281DRAFT_04991 are separated by 26 nucleotidesH281DRAFT_04991 and H281DRAFT_04992 are separated by 96 nucleotides H281DRAFT_04989: H281DRAFT_04989 - hypothetical protein, at 174,365 to 175,708 _04989 H281DRAFT_04990: H281DRAFT_04990 - type III secretion translocon protein HrpF, at 175,752 to 177,902 _04990 H281DRAFT_04991: H281DRAFT_04991 - hypothetical protein, at 177,929 to 178,171 _04991 H281DRAFT_04992: H281DRAFT_04992 - hypothetical protein, at 178,268 to 179,230 _04992 Position (kb) 175 176 177 178Strain fitness (log2 ratio) -1 0 1 2at 174.793 kb on - strand, within H281DRAFT_04989at 174.793 kb on - strand, within H281DRAFT_04989at 175.274 kb on - strand, within H281DRAFT_04989at 175.482 kb on - strand, within H281DRAFT_04989at 175.607 kb on - strandat 176.699 kb on - strand, within H281DRAFT_04990at 176.813 kb on - strand, within H281DRAFT_04990at 176.887 kb on + strand, within H281DRAFT_04990at 178.038 kb on + strand, within H281DRAFT_04991at 178.698 kb on + strand, within H281DRAFT_04992

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Per-strain Table

Position Strand Gene LocusTag Fraction 2-Deoxy-D-ribonic lithium salt 10 mM (C)
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174,793 - H281DRAFT_04989 0.32 +0.2
174,793 - H281DRAFT_04989 0.32 -0.6
175,274 - H281DRAFT_04989 0.68 +0.5
175,482 - H281DRAFT_04989 0.83 +0.8
175,607 - +0.6
176,699 - H281DRAFT_04990 0.44 +0.8
176,813 - H281DRAFT_04990 0.49 +2.0
176,887 + H281DRAFT_04990 0.53 +0.7
178,038 + H281DRAFT_04991 0.45 -0.8
178,698 + H281DRAFT_04992 0.45 -0.4

Or see this region's nucleotide sequence