Strain Fitness in Paraburkholderia bryophila 376MFSha3.1 around H281DRAFT_03961

Experiment: 2-Deoxy-D-ribonic lithium salt 10 mM (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntH281DRAFT_03960 and H281DRAFT_03961 are separated by 410 nucleotidesH281DRAFT_03961 and H281DRAFT_03962 overlap by 1 nucleotides H281DRAFT_03960: H281DRAFT_03960 - disulfide bond formation protein DsbB, at 63,708 to 64,217 _03960 H281DRAFT_03961: H281DRAFT_03961 - xanthine dehydrogenase, small subunit (EC 1.17.1.4) (from data), at 64,628 to 66,256 _03961 H281DRAFT_03962: H281DRAFT_03962 - xanthine dehydrogenase, molybdenum binding subunit apoprotein, at 66,256 to 68,706 _03962 Position (kb) 64 65 66 67Strain fitness (log2 ratio) -1 0 1 2at 63.637 kb on + strandat 63.687 kb on + strandat 63.688 kb on - strandat 64.233 kb on + strandat 64.251 kb on + strandat 64.251 kb on + strandat 64.306 kb on + strandat 64.307 kb on - strandat 64.592 kb on - strandat 64.607 kb on + strandat 64.613 kb on + strandat 64.637 kb on + strandat 64.638 kb on - strandat 65.477 kb on + strand, within H281DRAFT_03961at 65.477 kb on + strand, within H281DRAFT_03961at 65.478 kb on - strand, within H281DRAFT_03961at 65.478 kb on - strand, within H281DRAFT_03961at 65.478 kb on - strand, within H281DRAFT_03961at 65.565 kb on - strand, within H281DRAFT_03961at 65.771 kb on + strand, within H281DRAFT_03961at 65.864 kb on + strand, within H281DRAFT_03961at 65.864 kb on + strand, within H281DRAFT_03961at 65.865 kb on - strand, within H281DRAFT_03961at 65.865 kb on - strand, within H281DRAFT_03961at 65.882 kb on + strand, within H281DRAFT_03961at 66.081 kb on - strand, within H281DRAFT_03961at 66.407 kb on - strandat 66.619 kb on + strand, within H281DRAFT_03962at 66.620 kb on - strand, within H281DRAFT_03962at 66.978 kb on + strand, within H281DRAFT_03962at 66.978 kb on + strand, within H281DRAFT_03962at 66.978 kb on + strand, within H281DRAFT_03962at 66.979 kb on - strand, within H281DRAFT_03962at 66.979 kb on - strand, within H281DRAFT_03962at 66.999 kb on + strand, within H281DRAFT_03962at 67.175 kb on - strand, within H281DRAFT_03962at 67.227 kb on - strand, within H281DRAFT_03962

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Per-strain Table

Position Strand Gene LocusTag Fraction 2-Deoxy-D-ribonic lithium salt 10 mM (C)
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63,637 + -0.0
63,687 + +0.9
63,688 - +1.0
64,233 + -0.2
64,251 + -0.8
64,251 + +0.4
64,306 + -0.4
64,307 - +0.1
64,592 - +0.6
64,607 + +0.2
64,613 + +0.4
64,637 + -0.2
64,638 - -0.2
65,477 + H281DRAFT_03961 0.52 -0.2
65,477 + H281DRAFT_03961 0.52 -1.0
65,478 - H281DRAFT_03961 0.52 +0.8
65,478 - H281DRAFT_03961 0.52 -0.3
65,478 - H281DRAFT_03961 0.52 +0.9
65,565 - H281DRAFT_03961 0.58 -0.4
65,771 + H281DRAFT_03961 0.70 -1.2
65,864 + H281DRAFT_03961 0.76 +0.2
65,864 + H281DRAFT_03961 0.76 -0.8
65,865 - H281DRAFT_03961 0.76 -0.0
65,865 - H281DRAFT_03961 0.76 +1.4
65,882 + H281DRAFT_03961 0.77 -0.2
66,081 - H281DRAFT_03961 0.89 -0.5
66,407 - +0.8
66,619 + H281DRAFT_03962 0.15 -0.8
66,620 - H281DRAFT_03962 0.15 +0.7
66,978 + H281DRAFT_03962 0.29 +1.8
66,978 + H281DRAFT_03962 0.29 +0.4
66,978 + H281DRAFT_03962 0.29 +0.5
66,979 - H281DRAFT_03962 0.29 +0.2
66,979 - H281DRAFT_03962 0.29 -1.6
66,999 + H281DRAFT_03962 0.30 -0.8
67,175 - H281DRAFT_03962 0.37 +0.4
67,227 - H281DRAFT_03962 0.40 +1.1

Or see this region's nucleotide sequence