Strain Fitness in Paraburkholderia bryophila 376MFSha3.1 around H281DRAFT_02951

Experiment: 2-Deoxy-D-ribonic lithium salt 10 mM (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntH281DRAFT_02950 and H281DRAFT_02951 are separated by 16 nucleotidesH281DRAFT_02951 and H281DRAFT_02952 are separated by 56 nucleotides H281DRAFT_02950: H281DRAFT_02950 - DNA-binding transcriptional regulator, LysR family, at 564,276 to 565,265 _02950 H281DRAFT_02951: H281DRAFT_02951 - 5-deoxyglucuronate isomerase, at 565,282 to 566,112 _02951 H281DRAFT_02952: H281DRAFT_02952 - fructuronate reductase, at 566,169 to 567,662 _02952 Position (kb) 565 566 567Strain fitness (log2 ratio) -2 -1 0 1 2at 564.291 kb on - strandat 564.355 kb on + strandat 564.573 kb on + strand, within H281DRAFT_02950at 564.573 kb on + strand, within H281DRAFT_02950at 564.574 kb on - strand, within H281DRAFT_02950at 565.324 kb on + strandat 565.395 kb on - strandat 565.548 kb on - strand, within H281DRAFT_02951at 565.550 kb on + strand, within H281DRAFT_02951at 565.551 kb on - strand, within H281DRAFT_02951at 565.565 kb on + strand, within H281DRAFT_02951at 565.566 kb on - strand, within H281DRAFT_02951at 565.851 kb on - strandat 565.955 kb on - strand, within H281DRAFT_02951at 566.028 kb on - strand, within H281DRAFT_02951at 566.402 kb on - strand, within H281DRAFT_02952at 566.741 kb on - strand, within H281DRAFT_02952

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Per-strain Table

Position Strand Gene LocusTag Fraction 2-Deoxy-D-ribonic lithium salt 10 mM (C)
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564,291 - +0.0
564,355 + -0.0
564,573 + H281DRAFT_02950 0.30 +1.2
564,573 + H281DRAFT_02950 0.30 +1.5
564,574 - H281DRAFT_02950 0.30 +0.1
565,324 + -0.5
565,395 - +0.8
565,548 - H281DRAFT_02951 0.32 -0.9
565,550 + H281DRAFT_02951 0.32 +2.3
565,551 - H281DRAFT_02951 0.32 -1.8
565,565 + H281DRAFT_02951 0.34 +0.8
565,566 - H281DRAFT_02951 0.34 +0.7
565,851 - +0.4
565,955 - H281DRAFT_02951 0.81 -0.9
566,028 - H281DRAFT_02951 0.90 -0.2
566,402 - H281DRAFT_02952 0.16 +0.2
566,741 - H281DRAFT_02952 0.38 -0.3

Or see this region's nucleotide sequence