Strain Fitness in Paraburkholderia bryophila 376MFSha3.1 around H281DRAFT_01506

Experiment: 2-Deoxy-D-ribonic lithium salt 10 mM (C)

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntH281DRAFT_01505 and H281DRAFT_01506 are separated by 29 nucleotidesH281DRAFT_01506 and H281DRAFT_01507 are separated by 78 nucleotides H281DRAFT_01505: H281DRAFT_01505 - Nucleoside-diphosphate-sugar epimerase, at 375,264 to 376,244 _01505 H281DRAFT_01506: H281DRAFT_01506 - hydroxypyruvate isomerase, at 376,274 to 377,059 _01506 H281DRAFT_01507: H281DRAFT_01507 - D-galactonate transporter, at 377,138 to 378,472 _01507 Position (kb) 376 377 378Strain fitness (log2 ratio) -1 0 1at 375.381 kb on - strand, within H281DRAFT_01505at 375.796 kb on + strand, within H281DRAFT_01505at 376.264 kb on + strandat 376.265 kb on - strandat 376.290 kb on + strandat 376.354 kb on - strand, within H281DRAFT_01506at 376.399 kb on - strand, within H281DRAFT_01506at 376.522 kb on - strand, within H281DRAFT_01506at 376.695 kb on + strand, within H281DRAFT_01506at 377.174 kb on - strandat 377.587 kb on + strand, within H281DRAFT_01507

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction 2-Deoxy-D-ribonic lithium salt 10 mM (C)
remove
375,381 - H281DRAFT_01505 0.12 -0.4
375,796 + H281DRAFT_01505 0.54 +0.6
376,264 + +0.6
376,265 - -1.0
376,290 + -0.4
376,354 - H281DRAFT_01506 0.10 -0.3
376,399 - H281DRAFT_01506 0.16 +0.1
376,522 - H281DRAFT_01506 0.32 -0.6
376,695 + H281DRAFT_01506 0.54 -0.7
377,174 - +0.8
377,587 + H281DRAFT_01507 0.34 -0.7

Or see this region's nucleotide sequence