Strain Fitness in Paraburkholderia bryophila 376MFSha3.1 around H281DRAFT_01392

Experiment: 2-Deoxy-D-ribonic lithium salt 10 mM (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntH281DRAFT_01391 and H281DRAFT_01392 overlap by 4 nucleotidesH281DRAFT_01392 and H281DRAFT_01393 are separated by 16 nucleotides H281DRAFT_01391: H281DRAFT_01391 - two-component system, OmpR family, osmolarity sensor histidine kinase EnvZ, at 244,155 to 245,549 _01391 H281DRAFT_01392: H281DRAFT_01392 - two component transcriptional regulator, winged helix family, at 245,546 to 246,259 _01392 H281DRAFT_01393: H281DRAFT_01393 - hydrophobic/amphiphilic exporter-1, HAE1 family, at 246,276 to 249,407 _01393 Position (kb) 245 246 247Strain fitness (log2 ratio) -1 0 1at 245.384 kb on - strand, within H281DRAFT_01391at 245.574 kb on + strandat 245.956 kb on - strand, within H281DRAFT_01392at 246.337 kb on + strandat 246.615 kb on + strand, within H281DRAFT_01393at 246.841 kb on + strand, within H281DRAFT_01393at 247.022 kb on + strand, within H281DRAFT_01393at 247.022 kb on + strand, within H281DRAFT_01393at 247.022 kb on + strand, within H281DRAFT_01393at 247.022 kb on + strand, within H281DRAFT_01393at 247.023 kb on - strand, within H281DRAFT_01393

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Per-strain Table

Position Strand Gene LocusTag Fraction 2-Deoxy-D-ribonic lithium salt 10 mM (C)
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245,384 - H281DRAFT_01391 0.88 +0.3
245,574 + +0.7
245,956 - H281DRAFT_01392 0.57 +0.9
246,337 + -0.7
246,615 + H281DRAFT_01393 0.11 -0.2
246,841 + H281DRAFT_01393 0.18 +0.3
247,022 + H281DRAFT_01393 0.24 -0.7
247,022 + H281DRAFT_01393 0.24 +0.7
247,022 + H281DRAFT_01393 0.24 +0.1
247,022 + H281DRAFT_01393 0.24 -0.2
247,023 - H281DRAFT_01393 0.24 +0.6

Or see this region's nucleotide sequence