Strain Fitness in Paraburkholderia bryophila 376MFSha3.1 around H281DRAFT_01390

Experiment: 2-Deoxy-D-ribonic lithium salt 10 mM (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntH281DRAFT_01389 and H281DRAFT_01390 are separated by 197 nucleotidesH281DRAFT_01390 and H281DRAFT_01391 are separated by 22 nucleotides H281DRAFT_01389: H281DRAFT_01389 - PAS domain S-box-containing protein, at 240,969 to 243,668 _01389 H281DRAFT_01390: H281DRAFT_01390 - hypothetical protein, at 243,866 to 244,132 _01390 H281DRAFT_01391: H281DRAFT_01391 - two-component system, OmpR family, osmolarity sensor histidine kinase EnvZ, at 244,155 to 245,549 _01391 Position (kb) 243 244 245Strain fitness (log2 ratio) -1 0 1at 242.969 kb on + strand, within H281DRAFT_01389at 242.970 kb on - strand, within H281DRAFT_01389at 243.435 kb on + strandat 243.727 kb on - strandat 243.728 kb on + strandat 243.729 kb on - strandat 243.729 kb on - strandat 243.790 kb on - strandat 244.010 kb on + strand, within H281DRAFT_01390at 244.381 kb on + strand, within H281DRAFT_01391at 244.382 kb on - strand, within H281DRAFT_01391at 244.382 kb on - strand, within H281DRAFT_01391

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Per-strain Table

Position Strand Gene LocusTag Fraction 2-Deoxy-D-ribonic lithium salt 10 mM (C)
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242,969 + H281DRAFT_01389 0.74 -0.6
242,970 - H281DRAFT_01389 0.74 -0.2
243,435 + +0.6
243,727 - +0.6
243,728 + -0.2
243,729 - +0.3
243,729 - +0.3
243,790 - +0.3
244,010 + H281DRAFT_01390 0.54 +1.2
244,381 + H281DRAFT_01391 0.16 -1.1
244,382 - H281DRAFT_01391 0.16 -0.6
244,382 - H281DRAFT_01391 0.16 +1.3

Or see this region's nucleotide sequence