Strain Fitness in Paraburkholderia bryophila 376MFSha3.1 around H281DRAFT_01032

Experiment: 2-Deoxy-D-ribonic lithium salt 10 mM (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntH281DRAFT_01031 and H281DRAFT_01032 overlap by 4 nucleotidesH281DRAFT_01032 and H281DRAFT_01033 are separated by 127 nucleotides H281DRAFT_01031: H281DRAFT_01031 - peptide/nickel transport system ATP-binding protein, at 1,158,805 to 1,159,938 _01031 H281DRAFT_01032: H281DRAFT_01032 - peptide/nickel transport system ATP-binding protein, at 1,159,935 to 1,160,957 _01032 H281DRAFT_01033: H281DRAFT_01033 - DNA-binding transcriptional regulator, LysR family, at 1,161,085 to 1,161,966 _01033 Position (kb) 1159 1160 1161Strain fitness (log2 ratio) -1 0 1 2at 1159.214 kb on + strand, within H281DRAFT_01031at 1159.682 kb on + strand, within H281DRAFT_01031at 1160.191 kb on + strand, within H281DRAFT_01032at 1160.192 kb on - strand, within H281DRAFT_01032at 1160.192 kb on - strand, within H281DRAFT_01032at 1160.255 kb on - strand, within H281DRAFT_01032at 1160.255 kb on - strand, within H281DRAFT_01032at 1160.255 kb on - strand, within H281DRAFT_01032at 1160.307 kb on - strand, within H281DRAFT_01032at 1160.621 kb on - strand, within H281DRAFT_01032at 1160.922 kb on + strandat 1160.922 kb on + strandat 1160.922 kb on + strandat 1160.923 kb on - strandat 1160.923 kb on - strandat 1161.013 kb on - strandat 1161.587 kb on + strand, within H281DRAFT_01033

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Per-strain Table

Position Strand Gene LocusTag Fraction 2-Deoxy-D-ribonic lithium salt 10 mM (C)
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1,159,214 + H281DRAFT_01031 0.36 -1.4
1,159,682 + H281DRAFT_01031 0.77 +0.7
1,160,191 + H281DRAFT_01032 0.25 +0.2
1,160,192 - H281DRAFT_01032 0.25 +0.6
1,160,192 - H281DRAFT_01032 0.25 +0.5
1,160,255 - H281DRAFT_01032 0.31 +0.8
1,160,255 - H281DRAFT_01032 0.31 +0.1
1,160,255 - H281DRAFT_01032 0.31 +0.2
1,160,307 - H281DRAFT_01032 0.36 -0.5
1,160,621 - H281DRAFT_01032 0.67 -0.2
1,160,922 + +1.7
1,160,922 + -1.5
1,160,922 + -0.2
1,160,923 - +0.3
1,160,923 - +1.9
1,161,013 - +0.2
1,161,587 + H281DRAFT_01033 0.57 +0.5

Or see this region's nucleotide sequence