Strain Fitness in Paraburkholderia bryophila 376MFSha3.1 around H281DRAFT_00319

Experiment: 2-Deoxy-D-ribonic lithium salt 10 mM (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntH281DRAFT_00318 and H281DRAFT_00319 are separated by 140 nucleotidesH281DRAFT_00319 and H281DRAFT_00320 are separated by 273 nucleotidesH281DRAFT_00320 and H281DRAFT_00321 are separated by 223 nucleotides H281DRAFT_00318: H281DRAFT_00318 - Glycosyltransferase involved in cell wall bisynthesis, at 346,630 to 347,865 _00318 H281DRAFT_00319: H281DRAFT_00319 - recombination associated protein RdgC, at 348,006 to 348,929 _00319 H281DRAFT_00320: H281DRAFT_00320 - Uncharacterized conserved protein PhnB, glyoxalase superfamily, at 349,203 to 349,667 _00320 H281DRAFT_00321: H281DRAFT_00321 - Cell wall-associated hydrolase, NlpC family, at 349,891 to 351,606 _00321 Position (kb) 348 349Strain fitness (log2 ratio) -1 0 1 2at 347.120 kb on - strand, within H281DRAFT_00318at 347.152 kb on + strand, within H281DRAFT_00318at 347.153 kb on - strand, within H281DRAFT_00318at 347.521 kb on + strand, within H281DRAFT_00318at 347.524 kb on - strand, within H281DRAFT_00318at 347.675 kb on + strand, within H281DRAFT_00318at 347.676 kb on - strand, within H281DRAFT_00318at 347.676 kb on - strand, within H281DRAFT_00318at 347.679 kb on - strand, within H281DRAFT_00318at 347.903 kb on + strandat 347.943 kb on + strandat 347.943 kb on + strandat 347.944 kb on - strandat 347.971 kb on - strandat 347.971 kb on - strandat 347.971 kb on - strandat 348.115 kb on + strand, within H281DRAFT_00319at 348.115 kb on + strand, within H281DRAFT_00319at 348.168 kb on + strand, within H281DRAFT_00319at 348.168 kb on + strand, within H281DRAFT_00319at 348.168 kb on + strand, within H281DRAFT_00319at 348.248 kb on + strand, within H281DRAFT_00319at 348.371 kb on + strand, within H281DRAFT_00319at 348.371 kb on + strand, within H281DRAFT_00319at 348.622 kb on - strand, within H281DRAFT_00319at 349.051 kb on + strandat 349.052 kb on - strandat 349.052 kb on - strandat 349.097 kb on + strandat 349.097 kb on + strandat 349.139 kb on + strandat 349.277 kb on + strand, within H281DRAFT_00320at 349.277 kb on + strand, within H281DRAFT_00320at 349.802 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction 2-Deoxy-D-ribonic lithium salt 10 mM (C)
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347,120 - H281DRAFT_00318 0.40 -0.4
347,152 + H281DRAFT_00318 0.42 +1.9
347,153 - H281DRAFT_00318 0.42 -0.4
347,521 + H281DRAFT_00318 0.72 -0.0
347,524 - H281DRAFT_00318 0.72 +0.7
347,675 + H281DRAFT_00318 0.85 +0.2
347,676 - H281DRAFT_00318 0.85 +0.0
347,676 - H281DRAFT_00318 0.85 +0.1
347,679 - H281DRAFT_00318 0.85 -0.3
347,903 + -0.0
347,943 + +0.2
347,943 + +0.7
347,944 - +0.2
347,971 - +1.7
347,971 - +0.5
347,971 - +0.1
348,115 + H281DRAFT_00319 0.12 +1.1
348,115 + H281DRAFT_00319 0.12 +2.3
348,168 + H281DRAFT_00319 0.18 -0.8
348,168 + H281DRAFT_00319 0.18 -0.5
348,168 + H281DRAFT_00319 0.18 -0.7
348,248 + H281DRAFT_00319 0.26 -0.8
348,371 + H281DRAFT_00319 0.40 +0.0
348,371 + H281DRAFT_00319 0.40 +0.1
348,622 - H281DRAFT_00319 0.67 -0.5
349,051 + +0.0
349,052 - -0.9
349,052 - +0.3
349,097 + +0.4
349,097 + +0.5
349,139 + -0.4
349,277 + H281DRAFT_00320 0.16 -0.4
349,277 + H281DRAFT_00320 0.16 -0.2
349,802 + -0.2

Or see this region's nucleotide sequence