Strain Fitness in Paraburkholderia bryophila 376MFSha3.1 around H281DRAFT_00008

Experiment: 2-Deoxy-D-ribonic lithium salt 10 mM (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntH281DRAFT_00007 and H281DRAFT_00008 overlap by 4 nucleotidesH281DRAFT_00008 and H281DRAFT_00009 overlap by 4 nucleotidesH281DRAFT_00009 and H281DRAFT_00010 are separated by 300 nucleotides H281DRAFT_00007: H281DRAFT_00007 - Site-specific DNA recombinase, at 6,666 to 8,261 _00007 H281DRAFT_00008: H281DRAFT_00008 - hypothetical protein, at 8,258 to 8,575 _00008 H281DRAFT_00009: H281DRAFT_00009 - RepB plasmid partitioning protein, at 8,572 to 9,186 _00009 H281DRAFT_00010: H281DRAFT_00010 - nitrile hydratase, at 9,487 to 10,146 _00010 Position (kb) 8 9Strain fitness (log2 ratio) -1 0 1at 7.298 kb on + strand, within H281DRAFT_00007at 7.318 kb on + strand, within H281DRAFT_00007at 7.338 kb on + strand, within H281DRAFT_00007at 7.480 kb on - strand, within H281DRAFT_00007at 7.540 kb on + strand, within H281DRAFT_00007at 7.540 kb on + strand, within H281DRAFT_00007at 7.666 kb on + strand, within H281DRAFT_00007at 7.767 kb on + strand, within H281DRAFT_00007at 7.767 kb on + strand, within H281DRAFT_00007at 7.768 kb on - strand, within H281DRAFT_00007at 8.119 kb on - strandat 8.120 kb on + strandat 8.121 kb on - strandat 8.121 kb on - strandat 8.160 kb on + strandat 8.467 kb on - strand, within H281DRAFT_00008at 8.799 kb on - strand, within H281DRAFT_00009at 8.799 kb on - strand, within H281DRAFT_00009at 8.938 kb on + strand, within H281DRAFT_00009at 8.954 kb on - strand, within H281DRAFT_00009at 8.954 kb on - strand, within H281DRAFT_00009at 8.957 kb on - strand, within H281DRAFT_00009at 8.957 kb on - strand, within H281DRAFT_00009at 9.020 kb on + strand, within H281DRAFT_00009at 9.115 kb on + strand, within H281DRAFT_00009at 9.220 kb on + strandat 9.221 kb on - strandat 9.238 kb on + strandat 9.268 kb on + strandat 9.269 kb on - strandat 9.310 kb on - strandat 9.450 kb on + strandat 9.450 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction 2-Deoxy-D-ribonic lithium salt 10 mM (C)
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7,298 + H281DRAFT_00007 0.40 +0.4
7,318 + H281DRAFT_00007 0.41 +0.4
7,338 + H281DRAFT_00007 0.42 -0.5
7,480 - H281DRAFT_00007 0.51 +0.1
7,540 + H281DRAFT_00007 0.55 -0.1
7,540 + H281DRAFT_00007 0.55 +0.4
7,666 + H281DRAFT_00007 0.63 +1.3
7,767 + H281DRAFT_00007 0.69 +0.8
7,767 + H281DRAFT_00007 0.69 -0.9
7,768 - H281DRAFT_00007 0.69 +0.2
8,119 - -0.4
8,120 + -0.0
8,121 - +1.1
8,121 - -0.8
8,160 + +0.5
8,467 - H281DRAFT_00008 0.66 -0.9
8,799 - H281DRAFT_00009 0.37 -0.2
8,799 - H281DRAFT_00009 0.37 +0.0
8,938 + H281DRAFT_00009 0.60 +0.6
8,954 - H281DRAFT_00009 0.62 -0.5
8,954 - H281DRAFT_00009 0.62 +0.0
8,957 - H281DRAFT_00009 0.63 +0.2
8,957 - H281DRAFT_00009 0.63 +0.8
9,020 + H281DRAFT_00009 0.73 +1.2
9,115 + H281DRAFT_00009 0.88 +0.8
9,220 + -1.5
9,221 - -0.7
9,238 + -0.3
9,268 + +0.3
9,269 - -0.2
9,310 - -0.1
9,450 + +0.5
9,450 + +0.9

Or see this region's nucleotide sequence