Strain Fitness in Dechlorosoma suillum PS around Dsui_3363

Experiment: spiked with 1 mM Stressor (H2S) + 10 mM ClO4 and 20 mM lactate

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDsui_3362 and Dsui_3363 are separated by 471 nucleotidesDsui_3363 and Dsui_3364 are separated by 98 nucleotides Dsui_3362: Dsui_3362 - hypothetical protein, at 3,601,672 to 3,602,118 _3362 Dsui_3363: Dsui_3363 - hypothetical protein, at 3,602,590 to 3,603,486 _3363 Dsui_3364: Dsui_3364 - alanine--tRNA ligase, at 3,603,585 to 3,606,278 _3364 Position (kb) 3602 3603 3604Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2at 3601.593 kb on + strandat 3601.601 kb on - strandat 3601.647 kb on - strandat 3601.665 kb on + strandat 3601.665 kb on - strandat 3601.686 kb on - strandat 3601.720 kb on + strand, within Dsui_3362at 3601.727 kb on - strand, within Dsui_3362at 3601.744 kb on - strand, within Dsui_3362at 3601.752 kb on + strand, within Dsui_3362at 3601.752 kb on + strand, within Dsui_3362at 3601.760 kb on - strand, within Dsui_3362at 3601.782 kb on - strand, within Dsui_3362at 3601.820 kb on - strand, within Dsui_3362at 3601.892 kb on - strand, within Dsui_3362at 3601.910 kb on - strand, within Dsui_3362at 3601.917 kb on - strand, within Dsui_3362at 3601.923 kb on + strand, within Dsui_3362at 3601.923 kb on + strand, within Dsui_3362at 3601.923 kb on + strand, within Dsui_3362at 3601.923 kb on + strand, within Dsui_3362at 3601.958 kb on + strand, within Dsui_3362at 3601.958 kb on + strand, within Dsui_3362at 3601.958 kb on + strand, within Dsui_3362at 3601.958 kb on + strand, within Dsui_3362at 3601.958 kb on + strand, within Dsui_3362at 3601.958 kb on + strand, within Dsui_3362at 3601.966 kb on - strand, within Dsui_3362at 3601.966 kb on - strand, within Dsui_3362at 3601.966 kb on - strand, within Dsui_3362at 3601.966 kb on - strand, within Dsui_3362at 3601.966 kb on - strandat 3601.966 kb on - strand, within Dsui_3362at 3601.991 kb on + strand, within Dsui_3362at 3601.991 kb on + strand, within Dsui_3362at 3601.993 kb on - strand, within Dsui_3362at 3601.999 kb on - strandat 3602.015 kb on - strand, within Dsui_3362at 3602.039 kb on + strand, within Dsui_3362at 3602.103 kb on - strandat 3602.162 kb on + strandat 3602.174 kb on + strandat 3602.198 kb on - strandat 3602.198 kb on - strandat 3602.203 kb on + strandat 3602.203 kb on + strandat 3602.203 kb on + strandat 3602.211 kb on - strandat 3602.226 kb on - strandat 3602.226 kb on - strandat 3602.226 kb on - strandat 3602.226 kb on - strandat 3602.234 kb on - strandat 3602.257 kb on + strandat 3602.318 kb on + strandat 3602.318 kb on + strandat 3602.323 kb on + strandat 3602.328 kb on + strandat 3602.328 kb on + strandat 3602.328 kb on + strandat 3602.331 kb on - strandat 3602.335 kb on + strandat 3602.340 kb on + strandat 3602.343 kb on - strandat 3602.348 kb on - strandat 3602.357 kb on + strandat 3602.389 kb on + strandat 3602.392 kb on - strandat 3602.402 kb on - strandat 3602.442 kb on + strandat 3602.458 kb on - strandat 3602.485 kb on + strandat 3602.486 kb on + strandat 3602.486 kb on + strandat 3602.486 kb on + strandat 3602.486 kb on + strandat 3602.494 kb on - strandat 3602.494 kb on - strandat 3602.494 kb on - strandat 3602.524 kb on - strandat 3602.553 kb on + strandat 3602.553 kb on + strandat 3602.561 kb on - strandat 3602.561 kb on - strandat 3602.566 kb on - strandat 3602.588 kb on + strandat 3602.646 kb on - strandat 3602.653 kb on + strandat 3602.653 kb on + strandat 3602.661 kb on - strandat 3602.661 kb on - strandat 3602.685 kb on - strand, within Dsui_3363at 3602.700 kb on + strand, within Dsui_3363at 3602.705 kb on + strand, within Dsui_3363at 3602.705 kb on + strand, within Dsui_3363at 3602.709 kb on + strand, within Dsui_3363at 3602.710 kb on + strand, within Dsui_3363at 3602.722 kb on - strand, within Dsui_3363at 3602.753 kb on - strand, within Dsui_3363at 3602.760 kb on + strand, within Dsui_3363at 3602.768 kb on + strand, within Dsui_3363at 3602.768 kb on + strand, within Dsui_3363at 3602.768 kb on + strand, within Dsui_3363at 3602.768 kb on - strand, within Dsui_3363at 3602.776 kb on - strand, within Dsui_3363at 3602.778 kb on - strand, within Dsui_3363at 3602.820 kb on - strand, within Dsui_3363at 3602.893 kb on + strand, within Dsui_3363at 3602.914 kb on + strand, within Dsui_3363at 3602.922 kb on + strand, within Dsui_3363at 3602.922 kb on + strand, within Dsui_3363at 3602.922 kb on + strand, within Dsui_3363at 3602.930 kb on - strand, within Dsui_3363at 3602.930 kb on - strand, within Dsui_3363at 3602.930 kb on - strand, within Dsui_3363at 3602.945 kb on - strand, within Dsui_3363at 3602.971 kb on + strand, within Dsui_3363at 3602.991 kb on - strand, within Dsui_3363at 3603.034 kb on + strand, within Dsui_3363at 3603.042 kb on - strand, within Dsui_3363at 3603.042 kb on - strand, within Dsui_3363at 3603.042 kb on - strand, within Dsui_3363at 3603.050 kb on - strand, within Dsui_3363at 3603.085 kb on + strand, within Dsui_3363at 3603.095 kb on + strand, within Dsui_3363at 3603.095 kb on - strand, within Dsui_3363at 3603.102 kb on + strand, within Dsui_3363at 3603.116 kb on + strand, within Dsui_3363at 3603.189 kb on - strand, within Dsui_3363at 3603.246 kb on - strand, within Dsui_3363at 3603.266 kb on + strand, within Dsui_3363at 3603.291 kb on - strand, within Dsui_3363at 3603.305 kb on + strand, within Dsui_3363at 3603.305 kb on + strand, within Dsui_3363at 3603.305 kb on + strand, within Dsui_3363at 3603.310 kb on + strand, within Dsui_3363at 3603.313 kb on - strand, within Dsui_3363at 3603.313 kb on - strand, within Dsui_3363at 3603.319 kb on + strand, within Dsui_3363at 3603.337 kb on + strand, within Dsui_3363at 3603.338 kb on + strand, within Dsui_3363at 3603.366 kb on + strand, within Dsui_3363at 3603.408 kb on + strandat 3603.444 kb on + strandat 3603.444 kb on + strandat 3603.469 kb on - strandat 3603.486 kb on + strandat 3603.486 kb on + strandat 3603.489 kb on - strandat 3603.493 kb on + strandat 3603.493 kb on + strandat 3603.493 kb on + strandat 3603.501 kb on - strandat 3603.501 kb on - strandat 3603.542 kb on + strandat 3603.583 kb on + strandat 3603.591 kb on - strandat 3603.591 kb on - strandat 3603.591 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction spiked with 1 mM Stressor (H2S) + 10 mM ClO4 and 20 mM lactate
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3,601,593 + +1.8
3,601,601 - -3.2
3,601,647 - +0.6
3,601,665 + +1.2
3,601,665 - -0.4
3,601,686 - -1.1
3,601,720 + Dsui_3362 0.11 +0.4
3,601,727 - Dsui_3362 0.12 -0.2
3,601,744 - Dsui_3362 0.16 -4.1
3,601,752 + Dsui_3362 0.18 +0.1
3,601,752 + Dsui_3362 0.18 +1.4
3,601,760 - Dsui_3362 0.20 -0.6
3,601,782 - Dsui_3362 0.25 +0.2
3,601,820 - Dsui_3362 0.33 -3.4
3,601,892 - Dsui_3362 0.49 +0.6
3,601,910 - Dsui_3362 0.53 +0.1
3,601,917 - Dsui_3362 0.55 -2.1
3,601,923 + Dsui_3362 0.56 +1.1
3,601,923 + Dsui_3362 0.56 +0.7
3,601,923 + Dsui_3362 0.56 -0.1
3,601,923 + Dsui_3362 0.56 -0.2
3,601,958 + Dsui_3362 0.64 +1.1
3,601,958 + Dsui_3362 0.64 +0.7
3,601,958 + Dsui_3362 0.64 +0.8
3,601,958 + Dsui_3362 0.64 +0.5
3,601,958 + Dsui_3362 0.64 -0.3
3,601,958 + Dsui_3362 0.64 +1.6
3,601,966 - Dsui_3362 0.66 +1.3
3,601,966 - Dsui_3362 0.66 +0.7
3,601,966 - Dsui_3362 0.66 -3.8
3,601,966 - Dsui_3362 0.66 -1.5
3,601,966 - +2.5
3,601,966 - Dsui_3362 0.66 -0.4
3,601,991 + Dsui_3362 0.71 +1.1
3,601,991 + Dsui_3362 0.71 +1.1
3,601,993 - Dsui_3362 0.72 -0.2
3,601,999 - -3.0
3,602,015 - Dsui_3362 0.77 +0.3
3,602,039 + Dsui_3362 0.82 +0.6
3,602,103 - -0.6
3,602,162 + +0.5
3,602,174 + +0.2
3,602,198 - +0.0
3,602,198 - -0.2
3,602,203 + +0.3
3,602,203 + +1.3
3,602,203 + +1.6
3,602,211 - -3.2
3,602,226 - -0.5
3,602,226 - +0.9
3,602,226 - -0.6
3,602,226 - -2.1
3,602,234 - -0.0
3,602,257 + +1.7
3,602,318 + +1.0
3,602,318 + +0.7
3,602,323 + +0.7
3,602,328 + +0.6
3,602,328 + +1.3
3,602,328 + +0.6
3,602,331 - +0.6
3,602,335 + +1.1
3,602,340 + -0.5
3,602,343 - -0.3
3,602,348 - -0.0
3,602,357 + +1.1
3,602,389 + +1.2
3,602,392 - -0.2
3,602,402 - -0.3
3,602,442 + -0.7
3,602,458 - +0.6
3,602,485 + +0.7
3,602,486 + +0.9
3,602,486 + +0.9
3,602,486 + -0.5
3,602,486 + +1.6
3,602,494 - +0.7
3,602,494 - +0.4
3,602,494 - -0.2
3,602,524 - -0.0
3,602,553 + +1.1
3,602,553 + +1.8
3,602,561 - +0.7
3,602,561 - -1.0
3,602,566 - +0.9
3,602,588 + +1.2
3,602,646 - +0.9
3,602,653 + -0.5
3,602,653 + +2.7
3,602,661 - +1.6
3,602,661 - +0.6
3,602,685 - Dsui_3363 0.11 -0.1
3,602,700 + Dsui_3363 0.12 +0.2
3,602,705 + Dsui_3363 0.13 +0.2
3,602,705 + Dsui_3363 0.13 +0.2
3,602,709 + Dsui_3363 0.13 +1.0
3,602,710 + Dsui_3363 0.13 -0.2
3,602,722 - Dsui_3363 0.15 +0.6
3,602,753 - Dsui_3363 0.18 -0.6
3,602,760 + Dsui_3363 0.19 +0.8
3,602,768 + Dsui_3363 0.20 -0.2
3,602,768 + Dsui_3363 0.20 -0.1
3,602,768 + Dsui_3363 0.20 +0.4
3,602,768 - Dsui_3363 0.20 +0.1
3,602,776 - Dsui_3363 0.21 -0.6
3,602,778 - Dsui_3363 0.21 +0.9
3,602,820 - Dsui_3363 0.26 +0.2
3,602,893 + Dsui_3363 0.34 +0.5
3,602,914 + Dsui_3363 0.36 -1.3
3,602,922 + Dsui_3363 0.37 +2.1
3,602,922 + Dsui_3363 0.37 -0.2
3,602,922 + Dsui_3363 0.37 +0.3
3,602,930 - Dsui_3363 0.38 +1.0
3,602,930 - Dsui_3363 0.38 +1.0
3,602,930 - Dsui_3363 0.38 +1.0
3,602,945 - Dsui_3363 0.40 +0.2
3,602,971 + Dsui_3363 0.42 +0.3
3,602,991 - Dsui_3363 0.45 +0.5
3,603,034 + Dsui_3363 0.49 +0.2
3,603,042 - Dsui_3363 0.50 +0.9
3,603,042 - Dsui_3363 0.50 +0.9
3,603,042 - Dsui_3363 0.50 +0.3
3,603,050 - Dsui_3363 0.51 +0.8
3,603,085 + Dsui_3363 0.55 +0.8
3,603,095 + Dsui_3363 0.56 +0.9
3,603,095 - Dsui_3363 0.56 +1.2
3,603,102 + Dsui_3363 0.57 +0.6
3,603,116 + Dsui_3363 0.59 +0.9
3,603,189 - Dsui_3363 0.67 +0.5
3,603,246 - Dsui_3363 0.73 +0.0
3,603,266 + Dsui_3363 0.75 +1.1
3,603,291 - Dsui_3363 0.78 +0.6
3,603,305 + Dsui_3363 0.80 -2.4
3,603,305 + Dsui_3363 0.80 +1.5
3,603,305 + Dsui_3363 0.80 -2.8
3,603,310 + Dsui_3363 0.80 +1.1
3,603,313 - Dsui_3363 0.81 +0.9
3,603,313 - Dsui_3363 0.81 +0.0
3,603,319 + Dsui_3363 0.81 +0.3
3,603,337 + Dsui_3363 0.83 +1.4
3,603,338 + Dsui_3363 0.83 +1.2
3,603,366 + Dsui_3363 0.87 +0.6
3,603,408 + +2.7
3,603,444 + +0.9
3,603,444 + +1.7
3,603,469 - -0.1
3,603,486 + +0.5
3,603,486 + +1.6
3,603,489 - +1.1
3,603,493 + +0.7
3,603,493 + +0.6
3,603,493 + +1.8
3,603,501 - +0.8
3,603,501 - +1.0
3,603,542 + +0.7
3,603,583 + +1.4
3,603,591 - +1.0
3,603,591 - +1.4
3,603,591 - +1.2

Or see this region's nucleotide sequence