Strain Fitness in Dechlorosoma suillum PS around Dsui_3322

Experiment: spiked with 1 mM Stressor (H2S) + 10 mM ClO4 and 20 mM lactate

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDsui_3320 and Dsui_3321 are separated by 153 nucleotidesDsui_3321 and Dsui_3322 are separated by 132 nucleotidesDsui_3322 and Dsui_3323 are separated by 137 nucleotides Dsui_3320: Dsui_3320 - 1,4-dihydroxy-2-naphthoate octaprenyltransferase, at 3,560,493 to 3,561,413 _3320 Dsui_3321: Dsui_3321 - tRNA-Leu, at 3,561,567 to 3,561,653 _3321 Dsui_3322: Dsui_3322 - S-adenosylmethionine:tRNA ribosyltransferase-isomerase, at 3,561,786 to 3,562,823 _3322 Dsui_3323: Dsui_3323 - tRNA-guanine transglycosylase, queuosine-34-forming, at 3,562,961 to 3,564,085 _3323 Position (kb) 3561 3562 3563Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2at 3560.789 kb on + strand, within Dsui_3320at 3560.830 kb on + strand, within Dsui_3320at 3560.877 kb on - strand, within Dsui_3320at 3560.966 kb on - strand, within Dsui_3320at 3561.086 kb on + strand, within Dsui_3320at 3561.141 kb on + strandat 3561.144 kb on - strand, within Dsui_3320at 3561.152 kb on + strand, within Dsui_3320at 3561.161 kb on + strand, within Dsui_3320at 3561.199 kb on + strandat 3561.209 kb on + strand, within Dsui_3320at 3561.217 kb on - strand, within Dsui_3320at 3561.217 kb on - strand, within Dsui_3320at 3561.437 kb on - strandat 3561.481 kb on + strandat 3561.489 kb on - strandat 3561.490 kb on - strandat 3561.524 kb on - strandat 3561.524 kb on - strandat 3561.665 kb on + strandat 3561.686 kb on - strandat 3561.768 kb on + strandat 3561.847 kb on + strandat 3561.889 kb on + strandat 3561.889 kb on + strandat 3561.921 kb on - strandat 3561.948 kb on + strand, within Dsui_3322at 3562.016 kb on + strand, within Dsui_3322at 3562.120 kb on + strand, within Dsui_3322at 3562.260 kb on + strand, within Dsui_3322at 3562.281 kb on + strand, within Dsui_3322at 3562.419 kb on - strandat 3562.546 kb on - strandat 3562.558 kb on + strand, within Dsui_3322at 3562.558 kb on + strand, within Dsui_3322at 3562.684 kb on + strandat 3562.684 kb on + strandat 3562.684 kb on + strand, within Dsui_3322at 3562.692 kb on - strandat 3562.695 kb on - strandat 3562.740 kb on + strandat 3562.740 kb on + strandat 3562.784 kb on + strandat 3562.824 kb on - strandat 3562.847 kb on + strandat 3562.847 kb on + strandat 3562.855 kb on - strandat 3562.877 kb on + strandat 3562.885 kb on - strandat 3562.888 kb on + strandat 3562.956 kb on + strandat 3562.956 kb on + strandat 3562.956 kb on + strandat 3562.956 kb on + strandat 3562.975 kb on + strandat 3563.030 kb on + strandat 3563.061 kb on + strandat 3563.061 kb on + strandat 3563.069 kb on - strandat 3563.111 kb on + strand, within Dsui_3323at 3563.206 kb on + strand, within Dsui_3323at 3563.263 kb on + strand, within Dsui_3323at 3563.282 kb on + strand, within Dsui_3323at 3563.633 kb on + strand, within Dsui_3323at 3563.788 kb on + strandat 3563.789 kb on + strand, within Dsui_3323

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Per-strain Table

Position Strand Gene LocusTag Fraction spiked with 1 mM Stressor (H2S) + 10 mM ClO4 and 20 mM lactate
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3,560,789 + Dsui_3320 0.32 +0.6
3,560,830 + Dsui_3320 0.37 +0.2
3,560,877 - Dsui_3320 0.42 +1.4
3,560,966 - Dsui_3320 0.51 +0.9
3,561,086 + Dsui_3320 0.64 +0.7
3,561,141 + +1.8
3,561,144 - Dsui_3320 0.71 +1.5
3,561,152 + Dsui_3320 0.72 -1.5
3,561,161 + Dsui_3320 0.73 +0.6
3,561,199 + +0.5
3,561,209 + Dsui_3320 0.78 -0.6
3,561,217 - Dsui_3320 0.79 +1.3
3,561,217 - Dsui_3320 0.79 +1.2
3,561,437 - +0.1
3,561,481 + +0.1
3,561,489 - +0.3
3,561,490 - -0.3
3,561,524 - +1.2
3,561,524 - +0.8
3,561,665 + -2.0
3,561,686 - +0.3
3,561,768 + -1.4
3,561,847 + -0.5
3,561,889 + +0.1
3,561,889 + -0.3
3,561,921 - -0.6
3,561,948 + Dsui_3322 0.16 -2.0
3,562,016 + Dsui_3322 0.22 -0.0
3,562,120 + Dsui_3322 0.32 -2.6
3,562,260 + Dsui_3322 0.46 +0.2
3,562,281 + Dsui_3322 0.48 +0.1
3,562,419 - -3.6
3,562,546 - -2.3
3,562,558 + Dsui_3322 0.74 +0.2
3,562,558 + Dsui_3322 0.74 -1.5
3,562,684 + +0.6
3,562,684 + -2.6
3,562,684 + Dsui_3322 0.87 +0.1
3,562,692 - +2.0
3,562,695 - -3.6
3,562,740 + -0.3
3,562,740 + +1.2
3,562,784 + +1.1
3,562,824 - -0.5
3,562,847 + +0.8
3,562,847 + +1.0
3,562,855 - -2.1
3,562,877 + +0.3
3,562,885 - -1.6
3,562,888 + +0.6
3,562,956 + +1.2
3,562,956 + +0.3
3,562,956 + +0.2
3,562,956 + +0.4
3,562,975 + -2.3
3,563,030 + -1.2
3,563,061 + -1.0
3,563,061 + -3.8
3,563,069 - -0.1
3,563,111 + Dsui_3323 0.13 -1.2
3,563,206 + Dsui_3323 0.22 -1.2
3,563,263 + Dsui_3323 0.27 -0.8
3,563,282 + Dsui_3323 0.29 -3.5
3,563,633 + Dsui_3323 0.60 -1.0
3,563,788 + -1.4
3,563,789 + Dsui_3323 0.74 -0.4

Or see this region's nucleotide sequence