Strain Fitness in Dechlorosoma suillum PS around Dsui_3196

Experiment: spiked with 1 mM Stressor (H2S) + 10 mM ClO4 and 20 mM lactate

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDsui_3194 and Dsui_3195 overlap by 4 nucleotidesDsui_3195 and Dsui_3196 are separated by 130 nucleotidesDsui_3196 and Dsui_3197 are separated by 215 nucleotides Dsui_3194: Dsui_3194 - pseudouridylate synthase I, at 3,428,225 to 3,429,052 _3194 Dsui_3195: Dsui_3195 - Cobalt transport protein, at 3,429,049 to 3,429,678 _3195 Dsui_3196: Dsui_3196 - FimV N-terminal domain protein, at 3,429,809 to 3,432,817 _3196 Dsui_3197: Dsui_3197 - aspartate-semialdehyde dehydrogenase, gamma-proteobacterial, at 3,433,033 to 3,434,166 _3197 Position (kb) 3429 3430 3431 3432 3433Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 3428.992 kb on + strandat 3428.993 kb on + strandat 3429.012 kb on - strandat 3429.027 kb on - strandat 3429.027 kb on - strandat 3429.066 kb on - strandat 3429.290 kb on - strand, within Dsui_3195at 3429.407 kb on - strandat 3429.431 kb on - strandat 3429.581 kb on + strandat 3429.826 kb on + strandat 3429.897 kb on - strandat 3430.022 kb on - strandat 3430.068 kb on + strandat 3430.377 kb on - strand, within Dsui_3196at 3430.416 kb on + strandat 3430.417 kb on + strand, within Dsui_3196at 3430.482 kb on + strand, within Dsui_3196at 3430.556 kb on - strand, within Dsui_3196at 3430.556 kb on - strand, within Dsui_3196at 3430.604 kb on + strand, within Dsui_3196at 3430.622 kb on + strand, within Dsui_3196at 3430.625 kb on - strand, within Dsui_3196at 3430.653 kb on + strand, within Dsui_3196at 3430.661 kb on + strand, within Dsui_3196at 3430.673 kb on - strand, within Dsui_3196at 3430.960 kb on - strand, within Dsui_3196at 3430.988 kb on - strand, within Dsui_3196at 3430.998 kb on - strand, within Dsui_3196at 3431.034 kb on - strand, within Dsui_3196at 3431.052 kb on + strand, within Dsui_3196at 3431.146 kb on + strand, within Dsui_3196at 3431.357 kb on + strand, within Dsui_3196at 3431.416 kb on + strand, within Dsui_3196at 3431.558 kb on - strand, within Dsui_3196at 3431.772 kb on + strand, within Dsui_3196at 3431.772 kb on + strand, within Dsui_3196at 3431.820 kb on + strand, within Dsui_3196at 3431.827 kb on - strand, within Dsui_3196at 3431.868 kb on - strand, within Dsui_3196at 3431.937 kb on + strand, within Dsui_3196at 3431.940 kb on - strand, within Dsui_3196at 3431.970 kb on + strand, within Dsui_3196at 3432.041 kb on - strand, within Dsui_3196at 3432.119 kb on + strand, within Dsui_3196at 3432.138 kb on + strand, within Dsui_3196at 3432.143 kb on + strand, within Dsui_3196at 3432.171 kb on - strand, within Dsui_3196at 3432.177 kb on + strandat 3432.441 kb on + strand, within Dsui_3196at 3432.442 kb on - strand, within Dsui_3196at 3432.525 kb on + strandat 3432.538 kb on - strandat 3432.538 kb on - strandat 3432.574 kb on + strandat 3432.608 kb on + strandat 3432.657 kb on + strandat 3432.670 kb on - strandat 3432.766 kb on - strandat 3432.792 kb on - strandat 3432.831 kb on + strandat 3432.834 kb on + strandat 3432.885 kb on + strandat 3432.885 kb on + strandat 3432.885 kb on + strandat 3432.893 kb on - strandat 3432.893 kb on - strandat 3432.893 kb on - strandat 3432.893 kb on - strandat 3432.893 kb on - strandat 3432.893 kb on - strandat 3432.893 kb on - strandat 3432.893 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction spiked with 1 mM Stressor (H2S) + 10 mM ClO4 and 20 mM lactate
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3,428,992 + -1.9
3,428,993 + -2.5
3,429,012 - -3.2
3,429,027 - -0.7
3,429,027 - -2.5
3,429,066 - +0.2
3,429,290 - Dsui_3195 0.38 -3.4
3,429,407 - +1.7
3,429,431 - -1.2
3,429,581 + -3.1
3,429,826 + -1.6
3,429,897 - -0.1
3,430,022 - -0.6
3,430,068 + -0.9
3,430,377 - Dsui_3196 0.19 +0.5
3,430,416 + +2.1
3,430,417 + Dsui_3196 0.20 -0.1
3,430,482 + Dsui_3196 0.22 -1.7
3,430,556 - Dsui_3196 0.25 +0.7
3,430,556 - Dsui_3196 0.25 +0.4
3,430,604 + Dsui_3196 0.26 -0.4
3,430,622 + Dsui_3196 0.27 -0.6
3,430,625 - Dsui_3196 0.27 +0.5
3,430,653 + Dsui_3196 0.28 -0.2
3,430,661 + Dsui_3196 0.28 -0.0
3,430,673 - Dsui_3196 0.29 +1.2
3,430,960 - Dsui_3196 0.38 -1.9
3,430,988 - Dsui_3196 0.39 +1.0
3,430,998 - Dsui_3196 0.40 +0.9
3,431,034 - Dsui_3196 0.41 +1.0
3,431,052 + Dsui_3196 0.41 +0.2
3,431,146 + Dsui_3196 0.44 -1.1
3,431,357 + Dsui_3196 0.51 -0.7
3,431,416 + Dsui_3196 0.53 -0.1
3,431,558 - Dsui_3196 0.58 +1.0
3,431,772 + Dsui_3196 0.65 +0.4
3,431,772 + Dsui_3196 0.65 +0.7
3,431,820 + Dsui_3196 0.67 -0.7
3,431,827 - Dsui_3196 0.67 +0.6
3,431,868 - Dsui_3196 0.68 +0.7
3,431,937 + Dsui_3196 0.71 -1.3
3,431,940 - Dsui_3196 0.71 +1.2
3,431,970 + Dsui_3196 0.72 -0.1
3,432,041 - Dsui_3196 0.74 +0.4
3,432,119 + Dsui_3196 0.77 +0.6
3,432,138 + Dsui_3196 0.77 +0.4
3,432,143 + Dsui_3196 0.78 -2.8
3,432,171 - Dsui_3196 0.78 +0.7
3,432,177 + -3.6
3,432,441 + Dsui_3196 0.87 -0.7
3,432,442 - Dsui_3196 0.88 +0.5
3,432,525 + -0.2
3,432,538 - -0.0
3,432,538 - +1.2
3,432,574 + +0.0
3,432,608 + +0.1
3,432,657 + +0.1
3,432,670 - -0.2
3,432,766 - +0.8
3,432,792 - +0.4
3,432,831 + -0.2
3,432,834 + -3.3
3,432,885 + +0.9
3,432,885 + +0.7
3,432,885 + -0.5
3,432,893 - +0.8
3,432,893 - +1.1
3,432,893 - +1.0
3,432,893 - +0.8
3,432,893 - +1.1
3,432,893 - +1.0
3,432,893 - +0.8
3,432,893 - +0.5

Or see this region's nucleotide sequence