Strain Fitness in Dechlorosoma suillum PS around Dsui_3037

Experiment: spiked with 1 mM Stressor (H2S) + 10 mM ClO4 and 20 mM lactate

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDsui_3035 and Dsui_3036 are separated by 61 nucleotidesDsui_3036 and Dsui_3037 are separated by 85 nucleotidesDsui_3037 and Dsui_3038 are separated by 11 nucleotides Dsui_3035: Dsui_3035 - diguanylate cyclase (GGDEF) domain-containing protein, at 3,249,849 to 3,251,012 _3035 Dsui_3036: Dsui_3036 - Zn-finger containing NTP pyrophosphohydrolase, at 3,251,074 to 3,251,643 _3036 Dsui_3037: Dsui_3037 - proton-translocating NADH-quinone oxidoreductase, chain N, at 3,251,729 to 3,253,207 _3037 Dsui_3038: Dsui_3038 - proton-translocating NADH-quinone oxidoreductase, chain M, at 3,253,219 to 3,254,700 _3038 Position (kb) 3251 3252 3253 3254Strain fitness (log2 ratio) -1 0 1at 3250.741 kb on - strand, within Dsui_3035at 3250.851 kb on - strand, within Dsui_3035at 3251.026 kb on - strandat 3251.107 kb on + strandat 3251.142 kb on - strand, within Dsui_3036at 3251.199 kb on - strand, within Dsui_3036at 3251.246 kb on - strand, within Dsui_3036at 3251.306 kb on - strand, within Dsui_3036at 3251.494 kb on + strand, within Dsui_3036at 3251.520 kb on + strand, within Dsui_3036at 3251.550 kb on - strand, within Dsui_3036at 3251.576 kb on + strand, within Dsui_3036at 3251.584 kb on - strand, within Dsui_3036at 3251.591 kb on + strandat 3251.594 kb on - strandat 3251.657 kb on - strandat 3251.659 kb on + strandat 3251.703 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction spiked with 1 mM Stressor (H2S) + 10 mM ClO4 and 20 mM lactate
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3,250,741 - Dsui_3035 0.77 -0.4
3,250,851 - Dsui_3035 0.86 -0.5
3,251,026 - -0.1
3,251,107 + +0.5
3,251,142 - Dsui_3036 0.12 +0.9
3,251,199 - Dsui_3036 0.22 +0.4
3,251,246 - Dsui_3036 0.30 +0.8
3,251,306 - Dsui_3036 0.41 +1.2
3,251,494 + Dsui_3036 0.74 +0.4
3,251,520 + Dsui_3036 0.78 +0.5
3,251,550 - Dsui_3036 0.84 +0.8
3,251,576 + Dsui_3036 0.88 +0.5
3,251,584 - Dsui_3036 0.89 +1.6
3,251,591 + +1.2
3,251,594 - +0.4
3,251,657 - +0.5
3,251,659 + +0.9
3,251,703 - +0.9

Or see this region's nucleotide sequence