Strain Fitness in Dechlorosoma suillum PS around Dsui_2997

Experiment: spiked with 1 mM Stressor (H2S) + 10 mM ClO4 and 20 mM lactate

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntDsui_2996 and Dsui_2997 are separated by 124 nucleotidesDsui_2997 and Dsui_2998 are separated by 225 nucleotides Dsui_2996: Dsui_2996 - type II secretory pathway, ATPase PulE/Tfp pilus assembly pathway, ATPase PilB, at 3,205,475 to 3,207,289 _2996 Dsui_2997: Dsui_2997 - hypothetical protein, at 3,207,414 to 3,207,710 _2997 Dsui_2998: Dsui_2998 - ABC-type phosphate/phosphonate transport system, periplasmic component, at 3,207,936 to 3,208,802 _2998 Position (kb) 3207 3208Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2at 3206.418 kb on + strand, within Dsui_2996at 3206.497 kb on - strand, within Dsui_2996at 3206.519 kb on + strandat 3206.527 kb on - strand, within Dsui_2996at 3206.690 kb on - strand, within Dsui_2996at 3206.712 kb on - strand, within Dsui_2996at 3206.712 kb on - strand, within Dsui_2996at 3206.777 kb on - strand, within Dsui_2996at 3206.796 kb on - strand, within Dsui_2996at 3206.842 kb on + strand, within Dsui_2996at 3206.880 kb on + strandat 3206.960 kb on - strand, within Dsui_2996at 3207.087 kb on - strand, within Dsui_2996at 3207.108 kb on - strandat 3207.158 kb on - strandat 3207.315 kb on + strandat 3207.484 kb on - strandat 3207.520 kb on + strand, within Dsui_2997at 3207.584 kb on - strand, within Dsui_2997at 3207.624 kb on + strand, within Dsui_2997at 3207.679 kb on - strand, within Dsui_2997at 3207.968 kb on + strandat 3207.978 kb on + strandat 3208.055 kb on + strand, within Dsui_2998at 3208.055 kb on + strand, within Dsui_2998at 3208.055 kb on + strand, within Dsui_2998at 3208.063 kb on - strandat 3208.063 kb on - strandat 3208.199 kb on + strand, within Dsui_2998at 3208.248 kb on - strandat 3208.329 kb on + strand, within Dsui_2998at 3208.393 kb on + strand, within Dsui_2998at 3208.414 kb on - strandat 3208.492 kb on + strand, within Dsui_2998at 3208.500 kb on - strandat 3208.575 kb on + strand, within Dsui_2998at 3208.612 kb on - strand, within Dsui_2998at 3208.657 kb on + strand, within Dsui_2998at 3208.662 kb on + strand, within Dsui_2998at 3208.670 kb on - strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction spiked with 1 mM Stressor (H2S) + 10 mM ClO4 and 20 mM lactate
remove
3,206,418 + Dsui_2996 0.52 -3.0
3,206,497 - Dsui_2996 0.56 +0.6
3,206,519 + -2.7
3,206,527 - Dsui_2996 0.58 +0.6
3,206,690 - Dsui_2996 0.67 +0.3
3,206,712 - Dsui_2996 0.68 +0.1
3,206,712 - Dsui_2996 0.68 +0.1
3,206,777 - Dsui_2996 0.72 +0.8
3,206,796 - Dsui_2996 0.73 +0.7
3,206,842 + Dsui_2996 0.75 -1.1
3,206,880 + -3.5
3,206,960 - Dsui_2996 0.82 -2.7
3,207,087 - Dsui_2996 0.89 +1.4
3,207,108 - -0.2
3,207,158 - +1.2
3,207,315 + -2.7
3,207,484 - -2.1
3,207,520 + Dsui_2997 0.36 +0.6
3,207,584 - Dsui_2997 0.57 +2.5
3,207,624 + Dsui_2997 0.71 +0.7
3,207,679 - Dsui_2997 0.89 +1.5
3,207,968 + +0.9
3,207,978 + +0.4
3,208,055 + Dsui_2998 0.14 -0.2
3,208,055 + Dsui_2998 0.14 -4.4
3,208,055 + Dsui_2998 0.14 -1.0
3,208,063 - -3.1
3,208,063 - -2.1
3,208,199 + Dsui_2998 0.30 -1.8
3,208,248 - -3.2
3,208,329 + Dsui_2998 0.45 -1.4
3,208,393 + Dsui_2998 0.53 -1.0
3,208,414 - -1.9
3,208,492 + Dsui_2998 0.64 +1.9
3,208,500 - +1.3
3,208,575 + Dsui_2998 0.74 +1.1
3,208,612 - Dsui_2998 0.78 -0.1
3,208,657 + Dsui_2998 0.83 +0.2
3,208,662 + Dsui_2998 0.84 +0.6
3,208,670 - -2.9

Or see this region's nucleotide sequence