Strain Fitness in Dechlorosoma suillum PS around Dsui_2955

Experiment: spiked with 1 mM Stressor (H2S) + 10 mM ClO4 and 20 mM lactate

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDsui_2954 and Dsui_2955 are separated by 803 nucleotidesDsui_2955 and Dsui_2956 overlap by 4 nucleotidesDsui_2956 and Dsui_2957 overlap by 7 nucleotides Dsui_2954: Dsui_2954 - acyl-CoA hydrolase, at 3,162,961 to 3,163,830 _2954 Dsui_2955: Dsui_2955 - cobalamin biosynthesis protein CbiM, at 3,164,634 to 3,165,311 _2955 Dsui_2956: Dsui_2956 - ABC-type cobalt transport system, periplasmic component, at 3,165,308 to 3,165,679 _2956 Dsui_2957: Dsui_2957 - cobalt ABC transporter, permease protein CbiQ, at 3,165,673 to 3,166,404 _2957 Position (kb) 3164 3165 3166Strain fitness (log2 ratio) -3 -2 -1 0 1at 3163.947 kb on - strandat 3163.986 kb on - strandat 3164.011 kb on - strandat 3164.216 kb on - strandat 3164.318 kb on - strandat 3164.330 kb on - strandat 3164.362 kb on + strandat 3164.362 kb on + strandat 3164.370 kb on - strandat 3164.419 kb on - strandat 3164.454 kb on + strandat 3164.625 kb on - strandat 3164.639 kb on + strandat 3164.790 kb on - strandat 3165.119 kb on + strand, within Dsui_2955at 3165.119 kb on + strand, within Dsui_2955at 3165.240 kb on + strand, within Dsui_2955at 3165.259 kb on + strandat 3165.367 kb on - strand, within Dsui_2956at 3165.575 kb on + strand, within Dsui_2956at 3165.650 kb on + strandat 3166.105 kb on - strand, within Dsui_2957at 3166.105 kb on - strandat 3166.154 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction spiked with 1 mM Stressor (H2S) + 10 mM ClO4 and 20 mM lactate
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3,163,947 - -1.5
3,163,986 - +1.2
3,164,011 - +0.9
3,164,216 - +0.8
3,164,318 - -1.2
3,164,330 - -0.7
3,164,362 + +1.2
3,164,362 + +0.6
3,164,370 - +0.2
3,164,419 - -0.7
3,164,454 + -0.0
3,164,625 - -2.5
3,164,639 + +0.4
3,164,790 - -1.2
3,165,119 + Dsui_2955 0.72 -0.5
3,165,119 + Dsui_2955 0.72 +0.6
3,165,240 + Dsui_2955 0.89 +0.5
3,165,259 + -0.4
3,165,367 - Dsui_2956 0.16 -3.0
3,165,575 + Dsui_2956 0.72 +1.5
3,165,650 + +0.7
3,166,105 - Dsui_2957 0.59 -0.7
3,166,105 - -1.8
3,166,154 - -1.5

Or see this region's nucleotide sequence