Strain Fitness in Dechlorosoma suillum PS around Dsui_2404

Experiment: spiked with 1 mM Stressor (H2S) + 10 mM ClO4 and 20 mM lactate

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDsui_2403 and Dsui_2404 are separated by 3 nucleotidesDsui_2404 and Dsui_2405 overlap by 4 nucleotides Dsui_2403: Dsui_2403 - universal bacterial protein YeaZ, at 2,555,662 to 2,556,345 _2403 Dsui_2404: Dsui_2404 - ribosomal-protein-alanine acetyltransferase, at 2,556,349 to 2,556,840 _2404 Dsui_2405: Dsui_2405 - uracil-DNA glycosylase, family 4, at 2,556,837 to 2,557,694 _2405 Position (kb) 2556 2557Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 2555.364 kb on + strandat 2555.372 kb on + strandat 2555.413 kb on - strandat 2555.413 kb on - strandat 2555.625 kb on - strandat 2556.354 kb on + strandat 2556.452 kb on + strand, within Dsui_2404at 2556.517 kb on + strand, within Dsui_2404at 2556.709 kb on + strand, within Dsui_2404at 2556.715 kb on + strand, within Dsui_2404at 2556.842 kb on + strandat 2557.699 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction spiked with 1 mM Stressor (H2S) + 10 mM ClO4 and 20 mM lactate
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2,555,364 + +0.8
2,555,372 + +0.5
2,555,413 - -3.2
2,555,413 - -0.9
2,555,625 - -2.1
2,556,354 + -0.7
2,556,452 + Dsui_2404 0.21 +0.2
2,556,517 + Dsui_2404 0.34 +1.1
2,556,709 + Dsui_2404 0.73 -0.5
2,556,715 + Dsui_2404 0.74 +0.5
2,556,842 + +1.2
2,557,699 + +1.9

Or see this region's nucleotide sequence