Strain Fitness in Dechlorosoma suillum PS around Dsui_1499

Experiment: spiked with 1 mM Stressor (H2S) + 10 mM ClO4 and 20 mM lactate

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDsui_1497 and Dsui_1498 are separated by 96 nucleotidesDsui_1498 and Dsui_1499 are separated by 79 nucleotidesDsui_1499 and Dsui_1500 overlap by 11 nucleotidesDsui_1500 and Dsui_1501 are separated by 154 nucleotides Dsui_1497: Dsui_1497 - YfdX protein, at 1,561,311 to 1,562,198 _1497 Dsui_1498: Dsui_1498 - hypothetical protein, at 1,562,295 to 1,562,906 _1498 Dsui_1499: Dsui_1499 - hypothetical protein, at 1,562,986 to 1,564,131 _1499 Dsui_1500: Dsui_1500 - thioredoxin, at 1,564,121 to 1,564,561 _1500 Dsui_1501: Dsui_1501 - PAS domain S-box/diguanylate cyclase (GGDEF) domain-containing protein, at 1,564,716 to 1,567,523 _1501 Position (kb) 1562 1563 1564 1565Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2 3 4at 1562.030 kb on - strand, within Dsui_1497at 1562.053 kb on + strand, within Dsui_1497at 1562.069 kb on - strand, within Dsui_1497at 1562.096 kb on + strand, within Dsui_1497at 1562.109 kb on - strand, within Dsui_1497at 1562.173 kb on + strandat 1562.201 kb on + strandat 1562.219 kb on - strandat 1562.219 kb on - strandat 1562.219 kb on - strandat 1562.219 kb on - strandat 1562.245 kb on + strandat 1562.245 kb on + strandat 1562.247 kb on - strandat 1562.253 kb on - strandat 1562.253 kb on - strandat 1562.331 kb on - strandat 1562.336 kb on + strandat 1562.336 kb on + strandat 1562.336 kb on + strandat 1562.338 kb on + strandat 1562.384 kb on + strand, within Dsui_1498at 1562.448 kb on + strand, within Dsui_1498at 1562.448 kb on + strand, within Dsui_1498at 1562.455 kb on + strand, within Dsui_1498at 1562.455 kb on - strand, within Dsui_1498at 1562.456 kb on - strand, within Dsui_1498at 1562.463 kb on - strand, within Dsui_1498at 1562.463 kb on - strand, within Dsui_1498at 1562.488 kb on - strand, within Dsui_1498at 1562.511 kb on - strand, within Dsui_1498at 1562.573 kb on + strand, within Dsui_1498at 1562.579 kb on - strand, within Dsui_1498at 1562.618 kb on + strand, within Dsui_1498at 1562.632 kb on + strand, within Dsui_1498at 1562.692 kb on + strand, within Dsui_1498at 1562.711 kb on + strand, within Dsui_1498at 1562.723 kb on + strand, within Dsui_1498at 1562.737 kb on + strand, within Dsui_1498at 1562.741 kb on - strand, within Dsui_1498at 1562.755 kb on - strand, within Dsui_1498at 1562.828 kb on + strand, within Dsui_1498at 1562.828 kb on - strand, within Dsui_1498at 1562.901 kb on + strandat 1562.901 kb on + strandat 1562.901 kb on + strandat 1562.901 kb on + strandat 1562.909 kb on - strandat 1562.909 kb on - strandat 1562.909 kb on - strandat 1562.910 kb on - strandat 1563.032 kb on + strandat 1563.046 kb on + strandat 1563.071 kb on + strandat 1563.072 kb on + strandat 1563.079 kb on - strandat 1563.079 kb on - strandat 1563.122 kb on - strand, within Dsui_1499at 1563.135 kb on + strand, within Dsui_1499at 1563.159 kb on + strand, within Dsui_1499at 1563.162 kb on - strand, within Dsui_1499at 1563.167 kb on + strand, within Dsui_1499at 1563.170 kb on + strand, within Dsui_1499at 1563.170 kb on + strand, within Dsui_1499at 1563.200 kb on + strand, within Dsui_1499at 1563.200 kb on + strand, within Dsui_1499at 1563.250 kb on - strand, within Dsui_1499at 1563.261 kb on - strand, within Dsui_1499at 1563.308 kb on - strand, within Dsui_1499at 1563.341 kb on + strand, within Dsui_1499at 1563.341 kb on + strand, within Dsui_1499at 1563.445 kb on - strand, within Dsui_1499at 1563.485 kb on + strand, within Dsui_1499at 1563.493 kb on - strand, within Dsui_1499at 1563.621 kb on - strand, within Dsui_1499at 1563.681 kb on - strand, within Dsui_1499at 1563.686 kb on - strand, within Dsui_1499at 1563.799 kb on + strand, within Dsui_1499at 1563.961 kb on + strand, within Dsui_1499at 1563.961 kb on + strand, within Dsui_1499at 1563.961 kb on + strand, within Dsui_1499at 1563.961 kb on + strand, within Dsui_1499at 1563.969 kb on - strand, within Dsui_1499at 1563.969 kb on - strand, within Dsui_1499at 1563.979 kb on - strand, within Dsui_1499at 1563.981 kb on + strand, within Dsui_1499at 1564.044 kb on + strandat 1564.103 kb on + strandat 1564.111 kb on - strandat 1564.236 kb on - strand, within Dsui_1500at 1564.390 kb on - strand, within Dsui_1500at 1564.402 kb on + strand, within Dsui_1500at 1564.402 kb on + strand, within Dsui_1500at 1564.419 kb on + strand, within Dsui_1500at 1564.496 kb on + strand, within Dsui_1500at 1564.697 kb on + strandat 1564.697 kb on + strandat 1564.705 kb on - strandat 1564.728 kb on + strandat 1564.736 kb on - strandat 1564.736 kb on - strandat 1564.740 kb on + strandat 1564.748 kb on - strandat 1564.809 kb on + strandat 1564.817 kb on - strandat 1564.817 kb on - strandat 1564.846 kb on + strandat 1564.854 kb on - strandat 1564.897 kb on + strandat 1564.914 kb on + strandat 1564.922 kb on - strandat 1565.069 kb on + strand, within Dsui_1501

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Per-strain Table

Position Strand Gene LocusTag Fraction spiked with 1 mM Stressor (H2S) + 10 mM ClO4 and 20 mM lactate
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1,562,030 - Dsui_1497 0.81 +0.2
1,562,053 + Dsui_1497 0.84 -1.7
1,562,069 - Dsui_1497 0.85 +0.0
1,562,096 + Dsui_1497 0.88 +0.4
1,562,109 - Dsui_1497 0.90 +1.2
1,562,173 + +0.7
1,562,201 + +0.5
1,562,219 - +1.3
1,562,219 - -3.3
1,562,219 - +0.6
1,562,219 - -0.3
1,562,245 + +1.0
1,562,245 + +0.8
1,562,247 - +0.7
1,562,253 - -1.5
1,562,253 - +1.4
1,562,331 - +0.3
1,562,336 + +0.7
1,562,336 + +0.1
1,562,336 + +0.9
1,562,338 + +0.5
1,562,384 + Dsui_1498 0.15 +1.1
1,562,448 + Dsui_1498 0.25 +0.5
1,562,448 + Dsui_1498 0.25 +0.7
1,562,455 + Dsui_1498 0.26 +0.3
1,562,455 - Dsui_1498 0.26 +1.2
1,562,456 - Dsui_1498 0.26 +0.3
1,562,463 - Dsui_1498 0.27 -0.3
1,562,463 - Dsui_1498 0.27 +0.9
1,562,488 - Dsui_1498 0.32 +0.2
1,562,511 - Dsui_1498 0.35 -1.1
1,562,573 + Dsui_1498 0.45 +0.6
1,562,579 - Dsui_1498 0.46 -3.5
1,562,618 + Dsui_1498 0.53 +1.5
1,562,632 + Dsui_1498 0.55 +0.8
1,562,692 + Dsui_1498 0.65 +0.3
1,562,711 + Dsui_1498 0.68 +0.9
1,562,723 + Dsui_1498 0.70 +0.4
1,562,737 + Dsui_1498 0.72 +1.1
1,562,741 - Dsui_1498 0.73 +1.1
1,562,755 - Dsui_1498 0.75 -0.9
1,562,828 + Dsui_1498 0.87 +0.5
1,562,828 - Dsui_1498 0.87 -1.9
1,562,901 + +0.5
1,562,901 + +0.7
1,562,901 + +1.5
1,562,901 + +0.5
1,562,909 - -2.6
1,562,909 - +0.8
1,562,909 - -0.9
1,562,910 - -1.9
1,563,032 + -0.4
1,563,046 + +0.5
1,563,071 + +1.5
1,563,072 + +0.0
1,563,079 - +0.3
1,563,079 - +0.5
1,563,122 - Dsui_1499 0.12 -2.3
1,563,135 + Dsui_1499 0.13 +0.6
1,563,159 + Dsui_1499 0.15 +0.6
1,563,162 - Dsui_1499 0.15 -1.2
1,563,167 + Dsui_1499 0.16 +0.7
1,563,170 + Dsui_1499 0.16 +0.2
1,563,170 + Dsui_1499 0.16 +0.8
1,563,200 + Dsui_1499 0.19 +2.9
1,563,200 + Dsui_1499 0.19 +0.5
1,563,250 - Dsui_1499 0.23 -0.2
1,563,261 - Dsui_1499 0.24 +0.9
1,563,308 - Dsui_1499 0.28 -0.3
1,563,341 + Dsui_1499 0.31 +1.6
1,563,341 + Dsui_1499 0.31 -1.9
1,563,445 - Dsui_1499 0.40 +0.8
1,563,485 + Dsui_1499 0.44 +1.3
1,563,493 - Dsui_1499 0.44 +0.5
1,563,621 - Dsui_1499 0.55 +2.2
1,563,681 - Dsui_1499 0.61 +1.0
1,563,686 - Dsui_1499 0.61 +0.4
1,563,799 + Dsui_1499 0.71 +0.9
1,563,961 + Dsui_1499 0.85 +0.6
1,563,961 + Dsui_1499 0.85 +1.0
1,563,961 + Dsui_1499 0.85 +1.1
1,563,961 + Dsui_1499 0.85 +0.9
1,563,969 - Dsui_1499 0.86 +1.2
1,563,969 - Dsui_1499 0.86 +0.7
1,563,979 - Dsui_1499 0.87 +0.1
1,563,981 + Dsui_1499 0.87 -0.7
1,564,044 + +1.7
1,564,103 + +0.5
1,564,111 - +0.1
1,564,236 - Dsui_1500 0.26 -1.1
1,564,390 - Dsui_1500 0.61 +0.2
1,564,402 + Dsui_1500 0.64 +1.3
1,564,402 + Dsui_1500 0.64 +0.6
1,564,419 + Dsui_1500 0.68 -0.3
1,564,496 + Dsui_1500 0.85 +0.8
1,564,697 + +0.5
1,564,697 + +0.7
1,564,705 - +0.2
1,564,728 + +0.4
1,564,736 - +0.9
1,564,736 - -0.0
1,564,740 + +1.0
1,564,748 - +0.1
1,564,809 + -1.4
1,564,817 - +0.6
1,564,817 - +4.5
1,564,846 + +0.0
1,564,854 - -3.9
1,564,897 + +0.4
1,564,914 + -0.9
1,564,922 - +0.7
1,565,069 + Dsui_1501 0.13 +3.1

Or see this region's nucleotide sequence