Strain Fitness in Dechlorosoma suillum PS around Dsui_1380

Experiment: spiked with 1 mM Stressor (H2S) + 10 mM ClO4 and 20 mM lactate

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntDsui_1378 and Dsui_1379 are separated by 6 nucleotidesDsui_1379 and Dsui_1380 are separated by 1 nucleotidesDsui_1380 and Dsui_1381 overlap by 4 nucleotidesDsui_1381 and Dsui_1382 overlap by 1 nucleotides Dsui_1378: Dsui_1378 - enoyl-CoA hydratase/carnithine racemase, at 1,434,564 to 1,435,340 _1378 Dsui_1379: Dsui_1379 - lipopolysaccharide transport periplasmic protein LptA, at 1,435,347 to 1,435,955 _1379 Dsui_1380: Dsui_1380 - hypothetical protein, at 1,435,957 to 1,436,547 _1380 Dsui_1381: Dsui_1381 - 3-deoxy-D-manno-octulosonate 8-phosphate phosphatase, YrbI family, at 1,436,544 to 1,437,056 _1381 Dsui_1382: Dsui_1382 - KpsF/GutQ family protein, at 1,437,056 to 1,438,045 _1382 Position (kb) 1435 1436 1437Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2 3at 1434.961 kb on - strand, within Dsui_1378at 1435.030 kb on - strand, within Dsui_1378at 1435.099 kb on + strand, within Dsui_1378at 1435.127 kb on - strand, within Dsui_1378at 1435.305 kb on + strandat 1435.305 kb on + strandat 1435.311 kb on + strandat 1435.344 kb on + strandat 1435.344 kb on + strandat 1435.352 kb on - strandat 1435.352 kb on - strandat 1435.352 kb on - strandat 1435.352 kb on - strandat 1435.352 kb on - strandat 1435.375 kb on - strandat 1435.379 kb on + strandat 1435.379 kb on + strandat 1435.387 kb on - strandat 1435.963 kb on - strandat 1436.676 kb on - strand, within Dsui_1381at 1436.829 kb on - strand, within Dsui_1381at 1436.957 kb on - strand, within Dsui_1381at 1437.062 kb on - strandat 1437.071 kb on - strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction spiked with 1 mM Stressor (H2S) + 10 mM ClO4 and 20 mM lactate
remove
1,434,961 - Dsui_1378 0.51 +0.9
1,435,030 - Dsui_1378 0.60 -0.5
1,435,099 + Dsui_1378 0.69 +0.7
1,435,127 - Dsui_1378 0.72 +0.9
1,435,305 + +2.9
1,435,305 + -1.4
1,435,311 + +0.8
1,435,344 + -2.1
1,435,344 + +0.9
1,435,352 - +1.3
1,435,352 - +1.0
1,435,352 - +0.8
1,435,352 - +0.2
1,435,352 - +0.9
1,435,375 - +1.4
1,435,379 + +1.5
1,435,379 + +1.9
1,435,387 - +1.0
1,435,963 - -4.4
1,436,676 - Dsui_1381 0.26 +0.4
1,436,829 - Dsui_1381 0.56 -0.4
1,436,957 - Dsui_1381 0.81 +1.2
1,437,062 - +1.0
1,437,071 - +0.7

Or see this region's nucleotide sequence