Strain Fitness in Dechlorosoma suillum PS around Dsui_1288

Experiment: spiked with 1 mM Stressor (H2S) + 10 mM ClO4 and 20 mM lactate

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDsui_1287 and Dsui_1288 are separated by 67 nucleotidesDsui_1288 and Dsui_1289 are separated by 9 nucleotidesDsui_1289 and Dsui_1290 overlap by 4 nucleotides Dsui_1287: Dsui_1287 - hypothetical protein, at 1,346,703 to 1,351,481 _1287 Dsui_1288: Dsui_1288 - hypothetical protein, at 1,351,549 to 1,352,496 _1288 Dsui_1289: Dsui_1289 - hypothetical protein, at 1,352,506 to 1,353,204 _1289 Dsui_1290: Dsui_1290 - hypothetical protein, at 1,353,201 to 1,353,854 _1290 Position (kb) 1351 1352 1353Strain fitness (log2 ratio) -5 -4 -3 -2 -1 0 1at 1350.565 kb on + strand, within Dsui_1287at 1350.573 kb on - strand, within Dsui_1287at 1350.602 kb on + strand, within Dsui_1287at 1350.648 kb on - strand, within Dsui_1287at 1350.702 kb on + strand, within Dsui_1287at 1350.732 kb on + strand, within Dsui_1287at 1350.737 kb on + strand, within Dsui_1287at 1350.737 kb on + strand, within Dsui_1287at 1350.745 kb on - strand, within Dsui_1287at 1350.813 kb on + strand, within Dsui_1287at 1350.820 kb on - strand, within Dsui_1287at 1350.981 kb on + strand, within Dsui_1287at 1351.020 kb on - strandat 1351.072 kb on - strandat 1351.121 kb on + strandat 1351.131 kb on + strandat 1351.131 kb on + strandat 1351.131 kb on + strandat 1351.199 kb on - strandat 1351.203 kb on - strandat 1351.303 kb on - strandat 1351.342 kb on - strandat 1351.468 kb on - strandat 1351.571 kb on + strandat 1351.579 kb on - strandat 1351.579 kb on - strandat 1351.650 kb on - strand, within Dsui_1288at 1351.706 kb on - strand, within Dsui_1288at 1351.706 kb on - strand, within Dsui_1288at 1351.737 kb on - strand, within Dsui_1288at 1351.808 kb on - strand, within Dsui_1288at 1351.863 kb on - strand, within Dsui_1288at 1351.869 kb on + strand, within Dsui_1288at 1351.884 kb on + strand, within Dsui_1288at 1351.884 kb on + strand, within Dsui_1288at 1351.906 kb on + strand, within Dsui_1288at 1351.907 kb on + strand, within Dsui_1288at 1351.982 kb on + strand, within Dsui_1288at 1352.062 kb on - strand, within Dsui_1288at 1352.118 kb on - strand, within Dsui_1288at 1352.153 kb on - strand, within Dsui_1288at 1352.160 kb on - strand, within Dsui_1288at 1352.170 kb on - strand, within Dsui_1288at 1352.292 kb on + strand, within Dsui_1288at 1352.292 kb on + strand, within Dsui_1288at 1352.324 kb on - strand, within Dsui_1288at 1352.339 kb on + strand, within Dsui_1288at 1352.354 kb on + strand, within Dsui_1288at 1352.354 kb on + strand, within Dsui_1288at 1352.355 kb on - strand, within Dsui_1288at 1352.362 kb on - strand, within Dsui_1288at 1352.368 kb on - strand, within Dsui_1288at 1352.428 kb on + strandat 1352.460 kb on - strandat 1352.465 kb on - strandat 1352.490 kb on + strandat 1352.498 kb on - strandat 1352.498 kb on - strandat 1352.503 kb on + strandat 1352.623 kb on + strand, within Dsui_1289at 1352.638 kb on + strand, within Dsui_1289at 1352.661 kb on + strand, within Dsui_1289at 1352.661 kb on + strand, within Dsui_1289at 1352.661 kb on + strand, within Dsui_1289at 1352.661 kb on + strand, within Dsui_1289at 1352.661 kb on + strand, within Dsui_1289at 1352.661 kb on + strand, within Dsui_1289at 1352.661 kb on + strand, within Dsui_1289at 1352.664 kb on - strand, within Dsui_1289at 1352.669 kb on - strand, within Dsui_1289at 1352.669 kb on - strand, within Dsui_1289at 1352.669 kb on - strand, within Dsui_1289at 1352.669 kb on - strand, within Dsui_1289at 1352.811 kb on - strand, within Dsui_1289at 1352.826 kb on - strand, within Dsui_1289at 1352.831 kb on - strand, within Dsui_1289at 1352.838 kb on + strand, within Dsui_1289at 1352.885 kb on + strand, within Dsui_1289at 1352.914 kb on - strand, within Dsui_1289at 1352.925 kb on + strand, within Dsui_1289at 1352.933 kb on - strand, within Dsui_1289at 1352.971 kb on - strand, within Dsui_1289at 1352.991 kb on + strand, within Dsui_1289at 1353.072 kb on + strand, within Dsui_1289at 1353.097 kb on - strand, within Dsui_1289at 1353.097 kb on - strand, within Dsui_1289at 1353.183 kb on + strandat 1353.191 kb on - strandat 1353.233 kb on + strandat 1353.240 kb on - strandat 1353.240 kb on - strandat 1353.309 kb on + strand, within Dsui_1290at 1353.317 kb on - strand, within Dsui_1290at 1353.352 kb on - strand, within Dsui_1290at 1353.376 kb on - strand, within Dsui_1290at 1353.388 kb on + strand, within Dsui_1290at 1353.401 kb on + strand, within Dsui_1290at 1353.409 kb on - strand, within Dsui_1290at 1353.409 kb on - strand, within Dsui_1290at 1353.409 kb on - strand, within Dsui_1290at 1353.492 kb on - strand, within Dsui_1290

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Per-strain Table

Position Strand Gene LocusTag Fraction spiked with 1 mM Stressor (H2S) + 10 mM ClO4 and 20 mM lactate
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1,350,565 + Dsui_1287 0.81 -2.5
1,350,573 - Dsui_1287 0.81 -2.3
1,350,602 + Dsui_1287 0.82 -1.8
1,350,648 - Dsui_1287 0.83 -2.3
1,350,702 + Dsui_1287 0.84 -1.0
1,350,732 + Dsui_1287 0.84 -2.6
1,350,737 + Dsui_1287 0.84 -1.4
1,350,737 + Dsui_1287 0.84 -3.1
1,350,745 - Dsui_1287 0.85 -3.0
1,350,813 + Dsui_1287 0.86 -0.6
1,350,820 - Dsui_1287 0.86 -1.7
1,350,981 + Dsui_1287 0.90 -1.8
1,351,020 - -5.0
1,351,072 - -2.6
1,351,121 + -0.9
1,351,131 + -2.7
1,351,131 + -1.8
1,351,131 + -2.5
1,351,199 - -0.1
1,351,203 - -1.9
1,351,303 - -1.8
1,351,342 - -2.4
1,351,468 - -2.2
1,351,571 + -1.1
1,351,579 - -2.5
1,351,579 - -2.0
1,351,650 - Dsui_1288 0.11 -2.9
1,351,706 - Dsui_1288 0.17 -3.0
1,351,706 - Dsui_1288 0.17 -2.1
1,351,737 - Dsui_1288 0.20 -4.7
1,351,808 - Dsui_1288 0.27 -2.0
1,351,863 - Dsui_1288 0.33 -2.3
1,351,869 + Dsui_1288 0.34 -1.0
1,351,884 + Dsui_1288 0.35 +0.9
1,351,884 + Dsui_1288 0.35 -0.2
1,351,906 + Dsui_1288 0.38 -1.2
1,351,907 + Dsui_1288 0.38 -1.9
1,351,982 + Dsui_1288 0.46 -2.5
1,352,062 - Dsui_1288 0.54 -3.9
1,352,118 - Dsui_1288 0.60 -3.3
1,352,153 - Dsui_1288 0.64 -1.9
1,352,160 - Dsui_1288 0.64 -3.8
1,352,170 - Dsui_1288 0.66 -1.8
1,352,292 + Dsui_1288 0.78 -2.6
1,352,292 + Dsui_1288 0.78 -0.5
1,352,324 - Dsui_1288 0.82 -4.1
1,352,339 + Dsui_1288 0.83 -2.1
1,352,354 + Dsui_1288 0.85 +0.2
1,352,354 + Dsui_1288 0.85 -1.9
1,352,355 - Dsui_1288 0.85 -2.3
1,352,362 - Dsui_1288 0.86 -2.0
1,352,368 - Dsui_1288 0.86 -1.3
1,352,428 + -1.8
1,352,460 - -5.3
1,352,465 - -3.1
1,352,490 + +0.9
1,352,498 - -1.7
1,352,498 - -1.0
1,352,503 + +0.4
1,352,623 + Dsui_1289 0.17 -2.4
1,352,638 + Dsui_1289 0.19 -1.7
1,352,661 + Dsui_1289 0.22 -1.4
1,352,661 + Dsui_1289 0.22 -1.1
1,352,661 + Dsui_1289 0.22 -1.9
1,352,661 + Dsui_1289 0.22 -2.8
1,352,661 + Dsui_1289 0.22 -2.4
1,352,661 + Dsui_1289 0.22 -0.9
1,352,661 + Dsui_1289 0.22 -1.4
1,352,664 - Dsui_1289 0.23 -0.3
1,352,669 - Dsui_1289 0.23 -5.4
1,352,669 - Dsui_1289 0.23 -1.3
1,352,669 - Dsui_1289 0.23 +0.7
1,352,669 - Dsui_1289 0.23 -5.1
1,352,811 - Dsui_1289 0.44 -2.6
1,352,826 - Dsui_1289 0.46 -1.6
1,352,831 - Dsui_1289 0.46 -2.6
1,352,838 + Dsui_1289 0.47 -3.8
1,352,885 + Dsui_1289 0.54 -1.7
1,352,914 - Dsui_1289 0.58 -2.2
1,352,925 + Dsui_1289 0.60 -1.8
1,352,933 - Dsui_1289 0.61 +0.2
1,352,971 - Dsui_1289 0.67 -1.0
1,352,991 + Dsui_1289 0.69 +0.9
1,353,072 + Dsui_1289 0.81 -1.2
1,353,097 - Dsui_1289 0.85 -0.5
1,353,097 - Dsui_1289 0.85 -2.1
1,353,183 + +0.9
1,353,191 - -0.7
1,353,233 + +0.1
1,353,240 - -1.4
1,353,240 - -1.4
1,353,309 + Dsui_1290 0.17 -0.2
1,353,317 - Dsui_1290 0.18 -1.9
1,353,352 - Dsui_1290 0.23 -1.5
1,353,376 - Dsui_1290 0.27 -2.3
1,353,388 + Dsui_1290 0.29 -1.5
1,353,401 + Dsui_1290 0.31 -2.1
1,353,409 - Dsui_1290 0.32 -1.2
1,353,409 - Dsui_1290 0.32 -1.6
1,353,409 - Dsui_1290 0.32 -3.2
1,353,492 - Dsui_1290 0.44 -1.2

Or see this region's nucleotide sequence