Strain Fitness in Vibrio cholerae E7946 ATCC 55056 around CSW01_19235

Experiment: ICP3_phage_4.1_MOI_rep1

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCSW01_19230 and CSW01_19235 are separated by 419 nucleotidesCSW01_19235 and CSW01_19240 are separated by 134 nucleotidesCSW01_19240 and CSW01_19245 are separated by 459 nucleotides CSW01_19230: CSW01_19230 - maltoporin, at 973,897 to 975,147 _19230 CSW01_19235: CSW01_19235 - glycogen debranching enzyme GlgX, at 975,567 to 977,537 _19235 CSW01_19240: CSW01_19240 - DUF2999 domain-containing protein, at 977,672 to 977,923 _19240 CSW01_19245: CSW01_19245 - methyl-accepting chemotaxis protein, at 978,383 to 980,014 _19245 Position (kb) 975 976 977 978Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 974.570 kb on - strand, within CSW01_19230at 974.580 kb on + strand, within CSW01_19230at 974.594 kb on - strand, within CSW01_19230at 974.663 kb on - strand, within CSW01_19230at 974.675 kb on - strand, within CSW01_19230at 974.689 kb on + strand, within CSW01_19230at 974.726 kb on + strand, within CSW01_19230at 974.757 kb on - strand, within CSW01_19230at 974.782 kb on + strand, within CSW01_19230at 974.782 kb on + strand, within CSW01_19230at 974.790 kb on - strand, within CSW01_19230at 974.813 kb on + strand, within CSW01_19230at 974.818 kb on + strand, within CSW01_19230at 974.821 kb on - strand, within CSW01_19230at 974.843 kb on - strand, within CSW01_19230at 974.843 kb on - strand, within CSW01_19230at 974.873 kb on - strand, within CSW01_19230at 974.913 kb on + strand, within CSW01_19230at 974.931 kb on - strand, within CSW01_19230at 974.952 kb on - strand, within CSW01_19230at 975.006 kb on - strand, within CSW01_19230at 975.014 kb on + strand, within CSW01_19230at 975.022 kb on - strand, within CSW01_19230at 975.022 kb on - strand, within CSW01_19230at 975.022 kb on - strand, within CSW01_19230at 975.057 kb on - strandat 975.066 kb on - strandat 975.220 kb on + strandat 975.256 kb on - strandat 975.260 kb on - strandat 975.260 kb on - strandat 975.272 kb on + strandat 975.282 kb on + strandat 975.424 kb on + strandat 975.425 kb on + strandat 975.433 kb on - strandat 975.433 kb on - strandat 975.440 kb on - strandat 975.455 kb on - strandat 975.509 kb on + strandat 975.533 kb on - strandat 975.537 kb on + strandat 975.581 kb on + strandat 975.581 kb on + strandat 975.581 kb on + strandat 975.589 kb on - strandat 975.621 kb on - strandat 975.621 kb on - strandat 975.629 kb on - strandat 975.674 kb on + strandat 975.674 kb on + strandat 975.674 kb on + strandat 975.682 kb on - strandat 975.682 kb on - strandat 975.692 kb on - strandat 975.719 kb on - strandat 975.736 kb on - strandat 975.786 kb on - strand, within CSW01_19235at 975.848 kb on + strand, within CSW01_19235at 975.848 kb on + strand, within CSW01_19235at 975.848 kb on + strand, within CSW01_19235at 975.848 kb on + strand, within CSW01_19235at 975.848 kb on + strand, within CSW01_19235at 975.848 kb on + strand, within CSW01_19235at 975.848 kb on + strand, within CSW01_19235at 975.856 kb on - strand, within CSW01_19235at 975.856 kb on - strand, within CSW01_19235at 975.856 kb on - strand, within CSW01_19235at 975.856 kb on - strand, within CSW01_19235at 975.856 kb on - strand, within CSW01_19235at 975.856 kb on - strand, within CSW01_19235at 975.890 kb on + strand, within CSW01_19235at 975.890 kb on + strand, within CSW01_19235at 975.890 kb on + strand, within CSW01_19235at 975.898 kb on - strand, within CSW01_19235at 975.898 kb on - strand, within CSW01_19235at 975.898 kb on - strand, within CSW01_19235at 975.990 kb on + strand, within CSW01_19235at 975.998 kb on - strand, within CSW01_19235at 975.999 kb on - strand, within CSW01_19235at 976.060 kb on - strand, within CSW01_19235at 976.106 kb on + strand, within CSW01_19235at 976.141 kb on - strand, within CSW01_19235at 976.157 kb on + strand, within CSW01_19235at 976.178 kb on - strand, within CSW01_19235at 976.257 kb on - strand, within CSW01_19235at 976.293 kb on + strand, within CSW01_19235at 976.314 kb on - strand, within CSW01_19235at 976.322 kb on - strand, within CSW01_19235at 976.361 kb on + strand, within CSW01_19235at 976.437 kb on + strand, within CSW01_19235at 976.437 kb on + strand, within CSW01_19235at 976.445 kb on - strand, within CSW01_19235at 976.474 kb on - strand, within CSW01_19235at 976.495 kb on - strand, within CSW01_19235at 976.582 kb on + strand, within CSW01_19235at 976.582 kb on + strand, within CSW01_19235at 976.590 kb on - strand, within CSW01_19235at 976.590 kb on - strand, within CSW01_19235at 976.597 kb on + strand, within CSW01_19235at 976.605 kb on - strand, within CSW01_19235at 976.670 kb on + strand, within CSW01_19235at 976.704 kb on - strand, within CSW01_19235at 976.709 kb on - strand, within CSW01_19235at 976.754 kb on + strand, within CSW01_19235at 976.754 kb on + strand, within CSW01_19235at 976.754 kb on + strand, within CSW01_19235at 976.762 kb on - strand, within CSW01_19235at 976.762 kb on - strand, within CSW01_19235at 976.775 kb on + strand, within CSW01_19235at 976.834 kb on + strand, within CSW01_19235at 976.834 kb on + strand, within CSW01_19235at 976.834 kb on + strand, within CSW01_19235at 976.834 kb on + strand, within CSW01_19235at 976.842 kb on - strand, within CSW01_19235at 976.842 kb on - strand, within CSW01_19235at 976.842 kb on - strand, within CSW01_19235at 976.919 kb on - strand, within CSW01_19235at 976.934 kb on - strand, within CSW01_19235at 976.967 kb on - strand, within CSW01_19235at 976.985 kb on + strand, within CSW01_19235at 977.048 kb on - strand, within CSW01_19235at 977.084 kb on + strand, within CSW01_19235at 977.086 kb on - strand, within CSW01_19235at 977.451 kb on - strandat 977.453 kb on + strandat 977.464 kb on - strandat 977.502 kb on + strandat 977.569 kb on + strandat 977.594 kb on - strandat 977.599 kb on - strandat 977.765 kb on + strand, within CSW01_19240at 977.829 kb on - strand, within CSW01_19240at 977.856 kb on - strand, within CSW01_19240at 977.955 kb on - strandat 978.050 kb on - strandat 978.180 kb on - strandat 978.180 kb on - strandat 978.259 kb on + strandat 978.259 kb on + strandat 978.259 kb on + strandat 978.267 kb on - strandat 978.267 kb on - strandat 978.267 kb on - strandat 978.267 kb on - strandat 978.288 kb on + strandat 978.379 kb on + strandat 978.379 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction ICP3_phage_4.1_MOI_rep1
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974,570 - CSW01_19230 0.54 -0.4
974,580 + CSW01_19230 0.55 -1.4
974,594 - CSW01_19230 0.56 +0.5
974,663 - CSW01_19230 0.61 -1.2
974,675 - CSW01_19230 0.62 -0.1
974,689 + CSW01_19230 0.63 +0.8
974,726 + CSW01_19230 0.66 +0.9
974,757 - CSW01_19230 0.69 +0.6
974,782 + CSW01_19230 0.71 +0.8
974,782 + CSW01_19230 0.71 +0.9
974,790 - CSW01_19230 0.71 +0.9
974,813 + CSW01_19230 0.73 +1.3
974,818 + CSW01_19230 0.74 -1.5
974,821 - CSW01_19230 0.74 +0.7
974,843 - CSW01_19230 0.76 +1.5
974,843 - CSW01_19230 0.76 +0.0
974,873 - CSW01_19230 0.78 +0.5
974,913 + CSW01_19230 0.81 -0.4
974,931 - CSW01_19230 0.83 +1.4
974,952 - CSW01_19230 0.84 +1.1
975,006 - CSW01_19230 0.89 -3.2
975,014 + CSW01_19230 0.89 +1.0
975,022 - CSW01_19230 0.90 +0.6
975,022 - CSW01_19230 0.90 -1.5
975,022 - CSW01_19230 0.90 +0.3
975,057 - -0.0
975,066 - +0.2
975,220 + -2.1
975,256 - +0.7
975,260 - +0.3
975,260 - -3.0
975,272 + +1.4
975,282 + +1.6
975,424 + +0.8
975,425 + -1.9
975,433 - +0.6
975,433 - -3.3
975,440 - +0.5
975,455 - -0.2
975,509 + -1.4
975,533 - +0.3
975,537 + -0.5
975,581 + +0.3
975,581 + +1.3
975,581 + +1.0
975,589 - -2.2
975,621 - +1.0
975,621 - -0.4
975,629 - +0.8
975,674 + -1.0
975,674 + -1.0
975,674 + -0.2
975,682 - +0.6
975,682 - -2.4
975,692 - -0.4
975,719 - +1.0
975,736 - -0.0
975,786 - CSW01_19235 0.11 -1.0
975,848 + CSW01_19235 0.14 +0.3
975,848 + CSW01_19235 0.14 +1.0
975,848 + CSW01_19235 0.14 -0.3
975,848 + CSW01_19235 0.14 +1.1
975,848 + CSW01_19235 0.14 +0.2
975,848 + CSW01_19235 0.14 +0.6
975,848 + CSW01_19235 0.14 -0.4
975,856 - CSW01_19235 0.15 -2.6
975,856 - CSW01_19235 0.15 -0.5
975,856 - CSW01_19235 0.15 +0.9
975,856 - CSW01_19235 0.15 -1.8
975,856 - CSW01_19235 0.15 +1.1
975,856 - CSW01_19235 0.15 +0.6
975,890 + CSW01_19235 0.16 +0.8
975,890 + CSW01_19235 0.16 -2.2
975,890 + CSW01_19235 0.16 -0.5
975,898 - CSW01_19235 0.17 -1.8
975,898 - CSW01_19235 0.17 -0.0
975,898 - CSW01_19235 0.17 +0.6
975,990 + CSW01_19235 0.21 +0.3
975,998 - CSW01_19235 0.22 -2.4
975,999 - CSW01_19235 0.22 -2.7
976,060 - CSW01_19235 0.25 -0.5
976,106 + CSW01_19235 0.27 -0.1
976,141 - CSW01_19235 0.29 -0.6
976,157 + CSW01_19235 0.30 +0.3
976,178 - CSW01_19235 0.31 +1.0
976,257 - CSW01_19235 0.35 -1.0
976,293 + CSW01_19235 0.37 +0.6
976,314 - CSW01_19235 0.38 -0.4
976,322 - CSW01_19235 0.38 +0.0
976,361 + CSW01_19235 0.40 +0.8
976,437 + CSW01_19235 0.44 +0.7
976,437 + CSW01_19235 0.44 +0.9
976,445 - CSW01_19235 0.45 -0.2
976,474 - CSW01_19235 0.46 -2.4
976,495 - CSW01_19235 0.47 -0.4
976,582 + CSW01_19235 0.51 +1.3
976,582 + CSW01_19235 0.51 -0.1
976,590 - CSW01_19235 0.52 +1.6
976,590 - CSW01_19235 0.52 -2.4
976,597 + CSW01_19235 0.52 -1.0
976,605 - CSW01_19235 0.53 -0.0
976,670 + CSW01_19235 0.56 +0.2
976,704 - CSW01_19235 0.58 -1.2
976,709 - CSW01_19235 0.58 +1.6
976,754 + CSW01_19235 0.60 -1.0
976,754 + CSW01_19235 0.60 -0.7
976,754 + CSW01_19235 0.60 -2.6
976,762 - CSW01_19235 0.61 +0.8
976,762 - CSW01_19235 0.61 +0.1
976,775 + CSW01_19235 0.61 +0.2
976,834 + CSW01_19235 0.64 +0.4
976,834 + CSW01_19235 0.64 -3.1
976,834 + CSW01_19235 0.64 +1.4
976,834 + CSW01_19235 0.64 +0.0
976,842 - CSW01_19235 0.65 +1.2
976,842 - CSW01_19235 0.65 +1.1
976,842 - CSW01_19235 0.65 -0.4
976,919 - CSW01_19235 0.69 +1.0
976,934 - CSW01_19235 0.69 -2.5
976,967 - CSW01_19235 0.71 +2.0
976,985 + CSW01_19235 0.72 -1.8
977,048 - CSW01_19235 0.75 -1.0
977,084 + CSW01_19235 0.77 +0.0
977,086 - CSW01_19235 0.77 +1.5
977,451 - +1.7
977,453 + +1.3
977,464 - +0.3
977,502 + +0.3
977,569 + +0.5
977,594 - +0.4
977,599 - -2.7
977,765 + CSW01_19240 0.37 +0.7
977,829 - CSW01_19240 0.62 +0.4
977,856 - CSW01_19240 0.73 +0.0
977,955 - -0.4
978,050 - +0.2
978,180 - +0.9
978,180 - -0.9
978,259 + +0.2
978,259 + -1.8
978,259 + +0.6
978,267 - +0.2
978,267 - -2.3
978,267 - -2.6
978,267 - +0.4
978,288 + +0.6
978,379 + -1.5
978,379 + -0.1

Or see this region's nucleotide sequence