Strain Fitness in Vibrio cholerae E7946 ATCC 55056 around CSW01_19200

Experiment: ICP3_phage_4.1_MOI_rep1

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCSW01_19195 and CSW01_19200 are separated by 114 nucleotidesCSW01_19200 and CSW01_19205 are separated by 209 nucleotides CSW01_19195: CSW01_19195 - LysR family transcriptional regulator, at 966,408 to 967,328 _19195 CSW01_19200: CSW01_19200 - hypothetical protein, at 967,443 to 967,802 _19200 CSW01_19205: CSW01_19205 - flavohemoglobin expression-modulating QEGLA motif protein, at 968,012 to 969,872 _19205 Position (kb) 967 968Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 966.567 kb on + strand, within CSW01_19195at 966.596 kb on - strand, within CSW01_19195at 966.596 kb on - strand, within CSW01_19195at 966.608 kb on - strand, within CSW01_19195at 966.781 kb on + strand, within CSW01_19195at 966.841 kb on + strand, within CSW01_19195at 966.913 kb on - strand, within CSW01_19195at 966.962 kb on + strand, within CSW01_19195at 966.962 kb on + strand, within CSW01_19195at 966.970 kb on - strand, within CSW01_19195at 966.970 kb on - strand, within CSW01_19195at 966.988 kb on + strand, within CSW01_19195at 967.015 kb on - strand, within CSW01_19195at 967.036 kb on - strand, within CSW01_19195at 967.073 kb on - strand, within CSW01_19195at 967.078 kb on + strand, within CSW01_19195at 967.078 kb on + strand, within CSW01_19195at 967.078 kb on + strand, within CSW01_19195at 967.117 kb on - strand, within CSW01_19195at 967.147 kb on + strand, within CSW01_19195at 967.249 kb on + strandat 967.259 kb on + strandat 967.300 kb on + strandat 967.406 kb on + strandat 967.443 kb on - strandat 967.453 kb on - strandat 967.453 kb on - strandat 967.760 kb on + strand, within CSW01_19200at 967.768 kb on - strandat 967.796 kb on + strandat 967.804 kb on - strandat 968.110 kb on - strandat 968.110 kb on - strandat 968.140 kb on - strandat 968.172 kb on + strandat 968.180 kb on - strandat 968.212 kb on - strand, within CSW01_19205at 968.212 kb on - strand, within CSW01_19205at 968.292 kb on + strand, within CSW01_19205at 968.383 kb on + strand, within CSW01_19205at 968.391 kb on - strand, within CSW01_19205at 968.404 kb on - strand, within CSW01_19205at 968.431 kb on + strand, within CSW01_19205at 968.460 kb on - strand, within CSW01_19205at 968.553 kb on + strand, within CSW01_19205at 968.566 kb on + strand, within CSW01_19205at 968.574 kb on - strand, within CSW01_19205at 968.622 kb on + strand, within CSW01_19205at 968.622 kb on + strand, within CSW01_19205at 968.622 kb on + strand, within CSW01_19205at 968.622 kb on + strand, within CSW01_19205at 968.622 kb on + strand, within CSW01_19205at 968.622 kb on + strand, within CSW01_19205at 968.622 kb on + strand, within CSW01_19205at 968.622 kb on + strand, within CSW01_19205at 968.622 kb on + strand, within CSW01_19205at 968.630 kb on - strand, within CSW01_19205at 968.630 kb on - strand, within CSW01_19205at 968.630 kb on - strand, within CSW01_19205at 968.630 kb on - strand, within CSW01_19205at 968.630 kb on - strand, within CSW01_19205at 968.630 kb on - strand, within CSW01_19205at 968.648 kb on + strand, within CSW01_19205at 968.657 kb on + strand, within CSW01_19205at 968.657 kb on + strand, within CSW01_19205at 968.665 kb on - strand, within CSW01_19205at 968.681 kb on - strand, within CSW01_19205at 968.783 kb on + strand, within CSW01_19205at 968.783 kb on + strand, within CSW01_19205at 968.783 kb on + strand, within CSW01_19205at 968.783 kb on + strand, within CSW01_19205at 968.783 kb on + strand, within CSW01_19205at 968.783 kb on + strand, within CSW01_19205at 968.791 kb on - strand, within CSW01_19205at 968.791 kb on - strand, within CSW01_19205at 968.791 kb on - strand, within CSW01_19205

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Per-strain Table

Position Strand Gene LocusTag Fraction ICP3_phage_4.1_MOI_rep1
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966,567 + CSW01_19195 0.17 -2.6
966,596 - CSW01_19195 0.20 -1.6
966,596 - CSW01_19195 0.20 +0.6
966,608 - CSW01_19195 0.22 +1.0
966,781 + CSW01_19195 0.40 +0.4
966,841 + CSW01_19195 0.47 -1.4
966,913 - CSW01_19195 0.55 +0.3
966,962 + CSW01_19195 0.60 -0.6
966,962 + CSW01_19195 0.60 +3.2
966,970 - CSW01_19195 0.61 -1.6
966,970 - CSW01_19195 0.61 +0.5
966,988 + CSW01_19195 0.63 -0.1
967,015 - CSW01_19195 0.66 -0.2
967,036 - CSW01_19195 0.68 -1.2
967,073 - CSW01_19195 0.72 -1.1
967,078 + CSW01_19195 0.73 +2.0
967,078 + CSW01_19195 0.73 +0.6
967,078 + CSW01_19195 0.73 +0.0
967,117 - CSW01_19195 0.77 +1.0
967,147 + CSW01_19195 0.80 -0.4
967,249 + -0.2
967,259 + -0.5
967,300 + -2.9
967,406 + -2.4
967,443 - -3.0
967,453 - +0.1
967,453 - +0.1
967,760 + CSW01_19200 0.88 -2.8
967,768 - +0.0
967,796 + -0.4
967,804 - +1.0
968,110 - -0.1
968,110 - -0.0
968,140 - -1.9
968,172 + -1.0
968,180 - -1.6
968,212 - CSW01_19205 0.11 -1.1
968,212 - CSW01_19205 0.11 -0.1
968,292 + CSW01_19205 0.15 -2.9
968,383 + CSW01_19205 0.20 -2.9
968,391 - CSW01_19205 0.20 -1.9
968,404 - CSW01_19205 0.21 +1.0
968,431 + CSW01_19205 0.23 -1.6
968,460 - CSW01_19205 0.24 +0.6
968,553 + CSW01_19205 0.29 +0.8
968,566 + CSW01_19205 0.30 -2.6
968,574 - CSW01_19205 0.30 +1.8
968,622 + CSW01_19205 0.33 +1.1
968,622 + CSW01_19205 0.33 -1.8
968,622 + CSW01_19205 0.33 +0.1
968,622 + CSW01_19205 0.33 +1.4
968,622 + CSW01_19205 0.33 -0.3
968,622 + CSW01_19205 0.33 +0.6
968,622 + CSW01_19205 0.33 +0.4
968,622 + CSW01_19205 0.33 +0.9
968,622 + CSW01_19205 0.33 -2.9
968,630 - CSW01_19205 0.33 +1.4
968,630 - CSW01_19205 0.33 -0.8
968,630 - CSW01_19205 0.33 -2.6
968,630 - CSW01_19205 0.33 +0.9
968,630 - CSW01_19205 0.33 +0.7
968,630 - CSW01_19205 0.33 +0.1
968,648 + CSW01_19205 0.34 +1.5
968,657 + CSW01_19205 0.35 +1.3
968,657 + CSW01_19205 0.35 -0.1
968,665 - CSW01_19205 0.35 -0.1
968,681 - CSW01_19205 0.36 +0.4
968,783 + CSW01_19205 0.41 -0.7
968,783 + CSW01_19205 0.41 -0.0
968,783 + CSW01_19205 0.41 +0.3
968,783 + CSW01_19205 0.41 -0.7
968,783 + CSW01_19205 0.41 -1.5
968,783 + CSW01_19205 0.41 +0.9
968,791 - CSW01_19205 0.42 +0.4
968,791 - CSW01_19205 0.42 -1.1
968,791 - CSW01_19205 0.42 -2.8

Or see this region's nucleotide sequence