Strain Fitness in Vibrio cholerae E7946 ATCC 55056 around CSW01_19185

Experiment: ICP3_phage_4.1_MOI_rep1

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCSW01_19170 and CSW01_19175 are separated by 65 nucleotidesCSW01_19175 and CSW01_19180 are separated by 10 nucleotidesCSW01_19180 and CSW01_19185 are separated by 0 nucleotidesCSW01_19185 and CSW01_19190 are separated by 255 nucleotidesCSW01_19190 and CSW01_19195 are separated by 76 nucleotides CSW01_19170: CSW01_19170 - Na+/H+ antiporter NhaD, at 961,886 to 963,319 _19170 CSW01_19175: CSW01_19175 - hypothetical protein, at 963,385 to 963,786 _19175 CSW01_19180: CSW01_19180 - cysteine methyltransferase, at 963,797 to 964,270 _19180 CSW01_19185: CSW01_19185 - 3-methyladenine DNA glycosylase, at 964,271 to 965,629 _19185 CSW01_19190: CSW01_19190 - DoxX family protein, at 965,885 to 966,331 _19190 CSW01_19195: CSW01_19195 - LysR family transcriptional regulator, at 966,408 to 967,328 _19195 Position (kb) 964 965 966Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 963.271 kb on + strandat 963.279 kb on - strandat 963.386 kb on + strandat 963.386 kb on + strandat 963.451 kb on - strand, within CSW01_19175at 963.483 kb on - strand, within CSW01_19175at 963.600 kb on - strand, within CSW01_19175at 963.650 kb on - strand, within CSW01_19175at 963.650 kb on - strand, within CSW01_19175at 963.652 kb on - strand, within CSW01_19175at 963.652 kb on - strand, within CSW01_19175at 963.725 kb on - strand, within CSW01_19175at 963.765 kb on + strandat 963.773 kb on - strandat 963.828 kb on + strandat 963.828 kb on + strandat 963.835 kb on + strandat 963.948 kb on + strand, within CSW01_19180at 963.948 kb on + strand, within CSW01_19180at 963.948 kb on + strand, within CSW01_19180at 963.948 kb on + strand, within CSW01_19180at 963.956 kb on - strand, within CSW01_19180at 963.956 kb on - strand, within CSW01_19180at 964.045 kb on - strand, within CSW01_19180at 964.078 kb on - strand, within CSW01_19180at 964.082 kb on + strand, within CSW01_19180at 964.129 kb on + strand, within CSW01_19180at 964.129 kb on + strand, within CSW01_19180at 964.129 kb on + strand, within CSW01_19180at 964.137 kb on - strand, within CSW01_19180at 964.175 kb on - strand, within CSW01_19180at 964.199 kb on + strand, within CSW01_19180at 964.217 kb on + strand, within CSW01_19180at 964.236 kb on - strandat 964.245 kb on + strandat 964.246 kb on - strandat 964.251 kb on - strandat 964.312 kb on - strandat 964.428 kb on + strand, within CSW01_19185at 964.435 kb on + strand, within CSW01_19185at 964.443 kb on - strand, within CSW01_19185at 964.518 kb on + strand, within CSW01_19185at 964.570 kb on + strand, within CSW01_19185at 964.570 kb on + strand, within CSW01_19185at 964.670 kb on + strand, within CSW01_19185at 964.690 kb on - strand, within CSW01_19185at 964.746 kb on - strand, within CSW01_19185at 964.776 kb on + strand, within CSW01_19185at 964.786 kb on + strand, within CSW01_19185at 964.868 kb on + strand, within CSW01_19185at 964.879 kb on + strand, within CSW01_19185at 964.887 kb on - strand, within CSW01_19185at 964.890 kb on - strand, within CSW01_19185at 964.894 kb on + strand, within CSW01_19185at 964.902 kb on - strand, within CSW01_19185at 964.903 kb on + strand, within CSW01_19185at 964.957 kb on + strand, within CSW01_19185at 964.958 kb on + strand, within CSW01_19185at 964.972 kb on - strand, within CSW01_19185at 965.009 kb on + strand, within CSW01_19185at 965.017 kb on - strand, within CSW01_19185at 965.041 kb on - strand, within CSW01_19185at 965.156 kb on - strand, within CSW01_19185at 965.299 kb on + strand, within CSW01_19185at 965.299 kb on + strand, within CSW01_19185at 965.308 kb on - strand, within CSW01_19185at 965.539 kb on - strandat 965.579 kb on + strandat 965.587 kb on - strandat 965.599 kb on + strandat 965.657 kb on + strandat 965.670 kb on - strandat 965.675 kb on + strandat 965.675 kb on + strandat 965.675 kb on + strandat 965.683 kb on - strandat 965.699 kb on + strandat 965.707 kb on - strandat 965.909 kb on + strandat 965.937 kb on + strand, within CSW01_19190at 965.937 kb on + strand, within CSW01_19190at 965.937 kb on + strand, within CSW01_19190at 965.945 kb on - strand, within CSW01_19190at 965.945 kb on - strand, within CSW01_19190at 965.950 kb on - strand, within CSW01_19190at 965.982 kb on + strand, within CSW01_19190at 966.032 kb on + strand, within CSW01_19190at 966.054 kb on + strand, within CSW01_19190at 966.054 kb on + strand, within CSW01_19190at 966.054 kb on + strand, within CSW01_19190at 966.054 kb on + strand, within CSW01_19190at 966.062 kb on - strand, within CSW01_19190at 966.065 kb on + strand, within CSW01_19190at 966.065 kb on + strand, within CSW01_19190at 966.333 kb on - strandat 966.390 kb on + strandat 966.415 kb on + strandat 966.567 kb on + strand, within CSW01_19195at 966.596 kb on - strand, within CSW01_19195at 966.596 kb on - strand, within CSW01_19195at 966.608 kb on - strand, within CSW01_19195

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Per-strain Table

Position Strand Gene LocusTag Fraction ICP3_phage_4.1_MOI_rep1
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963,271 + +0.3
963,279 - +1.0
963,386 + -0.7
963,386 + -0.1
963,451 - CSW01_19175 0.16 +0.7
963,483 - CSW01_19175 0.24 -1.6
963,600 - CSW01_19175 0.53 +2.0
963,650 - CSW01_19175 0.66 -2.4
963,650 - CSW01_19175 0.66 -1.8
963,652 - CSW01_19175 0.66 +1.1
963,652 - CSW01_19175 0.66 -1.9
963,725 - CSW01_19175 0.85 +0.7
963,765 + -1.0
963,773 - +1.0
963,828 + +0.7
963,828 + +1.1
963,835 + +2.2
963,948 + CSW01_19180 0.32 +1.0
963,948 + CSW01_19180 0.32 +1.1
963,948 + CSW01_19180 0.32 +1.6
963,948 + CSW01_19180 0.32 +0.4
963,956 - CSW01_19180 0.34 +1.4
963,956 - CSW01_19180 0.34 -0.4
964,045 - CSW01_19180 0.52 +1.4
964,078 - CSW01_19180 0.59 -0.3
964,082 + CSW01_19180 0.60 -0.3
964,129 + CSW01_19180 0.70 -0.3
964,129 + CSW01_19180 0.70 -3.0
964,129 + CSW01_19180 0.70 -0.6
964,137 - CSW01_19180 0.72 -1.0
964,175 - CSW01_19180 0.80 -3.1
964,199 + CSW01_19180 0.85 +0.7
964,217 + CSW01_19180 0.89 +0.1
964,236 - -2.2
964,245 + -0.8
964,246 - -0.5
964,251 - +0.9
964,312 - +0.0
964,428 + CSW01_19185 0.12 -1.5
964,435 + CSW01_19185 0.12 +0.9
964,443 - CSW01_19185 0.13 +0.2
964,518 + CSW01_19185 0.18 -1.0
964,570 + CSW01_19185 0.22 -0.7
964,570 + CSW01_19185 0.22 -1.7
964,670 + CSW01_19185 0.29 -2.9
964,690 - CSW01_19185 0.31 +0.5
964,746 - CSW01_19185 0.35 -1.6
964,776 + CSW01_19185 0.37 -2.5
964,786 + CSW01_19185 0.38 -1.4
964,868 + CSW01_19185 0.44 -0.8
964,879 + CSW01_19185 0.45 -0.6
964,887 - CSW01_19185 0.45 +1.2
964,890 - CSW01_19185 0.46 +1.1
964,894 + CSW01_19185 0.46 +0.6
964,902 - CSW01_19185 0.46 +0.7
964,903 + CSW01_19185 0.47 -2.4
964,957 + CSW01_19185 0.50 -2.9
964,958 + CSW01_19185 0.51 +0.9
964,972 - CSW01_19185 0.52 -1.6
965,009 + CSW01_19185 0.54 -1.1
965,017 - CSW01_19185 0.55 +1.2
965,041 - CSW01_19185 0.57 +1.2
965,156 - CSW01_19185 0.65 -3.2
965,299 + CSW01_19185 0.76 -0.6
965,299 + CSW01_19185 0.76 +1.4
965,308 - CSW01_19185 0.76 -0.0
965,539 - +2.7
965,579 + -1.0
965,587 - -0.7
965,599 + +0.5
965,657 + +1.1
965,670 - +1.0
965,675 + -0.7
965,675 + -0.1
965,675 + -1.2
965,683 - -1.6
965,699 + +2.2
965,707 - +1.3
965,909 + +1.5
965,937 + CSW01_19190 0.12 +1.3
965,937 + CSW01_19190 0.12 -1.3
965,937 + CSW01_19190 0.12 +1.8
965,945 - CSW01_19190 0.13 +0.0
965,945 - CSW01_19190 0.13 -0.7
965,950 - CSW01_19190 0.15 +0.6
965,982 + CSW01_19190 0.22 +0.4
966,032 + CSW01_19190 0.33 +1.5
966,054 + CSW01_19190 0.38 -1.0
966,054 + CSW01_19190 0.38 -3.7
966,054 + CSW01_19190 0.38 -2.6
966,054 + CSW01_19190 0.38 -0.7
966,062 - CSW01_19190 0.40 -1.2
966,065 + CSW01_19190 0.40 +0.2
966,065 + CSW01_19190 0.40 -1.8
966,333 - -0.5
966,390 + +1.8
966,415 + -1.6
966,567 + CSW01_19195 0.17 -2.6
966,596 - CSW01_19195 0.20 -1.6
966,596 - CSW01_19195 0.20 +0.6
966,608 - CSW01_19195 0.22 +1.0

Or see this region's nucleotide sequence