Experiment: ICP3_phage_4.1_MOI_rep1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt CSW01_18715 and CSW01_18720 overlap by 1 nucleotides CSW01_18720 and CSW01_18725 are separated by 133 nucleotides CSW01_18725 and CSW01_18730 are separated by 498 nucleotides
CSW01_18715: CSW01_18715 - iron ABC transporter permease, at 866,581 to 867,612
_18715
CSW01_18720: CSW01_18720 - hemin import ATP-binding protein HmuV, at 867,612 to 868,391
_18720
CSW01_18725: CSW01_18725 - TetR/AcrR family transcriptional regulator, at 868,525 to 869,010
_18725
CSW01_18730: CSW01_18730 - DUF406 domain-containing protein, at 869,509 to 869,811
_18730
Position (kb) 868
869
870 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 867.722 kb on - strand, within CSW01_18720 at 867.722 kb on - strand, within CSW01_18720 at 867.773 kb on + strand, within CSW01_18720 at 867.799 kb on + strand, within CSW01_18720 at 867.916 kb on + strand, within CSW01_18720 at 867.919 kb on - strand, within CSW01_18720 at 867.982 kb on - strand, within CSW01_18720 at 867.987 kb on + strand, within CSW01_18720 at 867.987 kb on + strand, within CSW01_18720 at 867.987 kb on + strand, within CSW01_18720 at 867.987 kb on + strand, within CSW01_18720 at 867.995 kb on - strand, within CSW01_18720 at 867.995 kb on - strand, within CSW01_18720 at 867.995 kb on - strand, within CSW01_18720 at 868.007 kb on + strand, within CSW01_18720 at 868.014 kb on - strand, within CSW01_18720 at 868.015 kb on - strand, within CSW01_18720 at 868.056 kb on + strand, within CSW01_18720 at 868.073 kb on + strand, within CSW01_18720 at 868.182 kb on + strand, within CSW01_18720 at 868.417 kb on + strand at 868.425 kb on - strand at 868.425 kb on - strand at 868.425 kb on - strand at 868.457 kb on + strand at 868.465 kb on - strand at 868.483 kb on + strand at 868.906 kb on - strand, within CSW01_18725 at 868.942 kb on + strand, within CSW01_18725 at 868.950 kb on - strand, within CSW01_18725 at 869.072 kb on + strand at 869.088 kb on + strand at 869.119 kb on + strand at 869.119 kb on + strand at 869.127 kb on - strand at 869.161 kb on - strand at 869.190 kb on + strand at 869.598 kb on - strand, within CSW01_18730 at 869.697 kb on + strand, within CSW01_18730 at 869.697 kb on - strand, within CSW01_18730 at 869.952 kb on + strand at 869.963 kb on + strand at 869.970 kb on + strand at 870.006 kb on - strand at 870.007 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction ICP3_phage_4.1_MOI_rep1 remove 867,722 - CSW01_18720 0.14 -3.5 867,722 - CSW01_18720 0.14 -1.3 867,773 + CSW01_18720 0.21 -2.1 867,799 + CSW01_18720 0.24 -1.7 867,916 + CSW01_18720 0.39 -3.3 867,919 - CSW01_18720 0.39 -0.8 867,982 - CSW01_18720 0.47 +1.0 867,987 + CSW01_18720 0.48 +1.9 867,987 + CSW01_18720 0.48 +1.5 867,987 + CSW01_18720 0.48 -0.1 867,987 + CSW01_18720 0.48 -1.8 867,995 - CSW01_18720 0.49 -0.6 867,995 - CSW01_18720 0.49 -0.3 867,995 - CSW01_18720 0.49 -0.1 868,007 + CSW01_18720 0.51 -1.0 868,014 - CSW01_18720 0.52 +0.4 868,015 - CSW01_18720 0.52 -0.4 868,056 + CSW01_18720 0.57 +2.0 868,073 + CSW01_18720 0.59 -1.4 868,182 + CSW01_18720 0.73 +0.4 868,417 + +0.4 868,425 - -1.0 868,425 - +1.0 868,425 - +1.4 868,457 + +1.1 868,465 - +0.1 868,483 + +0.4 868,906 - CSW01_18725 0.78 -1.4 868,942 + CSW01_18725 0.86 +0.7 868,950 - CSW01_18725 0.87 -2.2 869,072 + -0.2 869,088 + -0.5 869,119 + +2.0 869,119 + +1.6 869,127 - +0.7 869,161 - -2.3 869,190 + -2.2 869,598 - CSW01_18730 0.29 -2.9 869,697 + CSW01_18730 0.62 -1.6 869,697 - CSW01_18730 0.62 +0.3 869,952 + +1.0 869,963 + +0.3 869,970 + -2.3 870,006 - -2.2 870,007 - -3.0
Or see this region's nucleotide sequence