Strain Fitness in Vibrio cholerae E7946 ATCC 55056 around CSW01_18590

Experiment: ICP3_phage_4.1_MOI_rep1

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCSW01_18580 and CSW01_18585 overlap by 23 nucleotidesCSW01_18585 and CSW01_18590 are separated by 99 nucleotidesCSW01_18590 and CSW01_18595 overlap by 7 nucleotidesCSW01_18595 and CSW01_18600 are separated by 77 nucleotides CSW01_18580: CSW01_18580 - protein deglycase HchA, at 838,625 to 839,484 _18580 CSW01_18585: CSW01_18585 - LuxR family transcriptional regulator, at 839,462 to 840,223 _18585 CSW01_18590: CSW01_18590 - LysR family transcriptional regulator, at 840,323 to 841,261 _18590 CSW01_18595: CSW01_18595 - VOC family protein, at 841,255 to 841,638 _18595 CSW01_18600: CSW01_18600 - PepSY domain-containing protein, at 841,716 to 843,128 _18600 Position (kb) 840 841 842Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 839.431 kb on + strandat 839.509 kb on - strandat 839.567 kb on + strand, within CSW01_18585at 839.575 kb on - strand, within CSW01_18585at 839.643 kb on - strand, within CSW01_18585at 839.643 kb on - strand, within CSW01_18585at 839.799 kb on + strand, within CSW01_18585at 839.804 kb on + strand, within CSW01_18585at 839.812 kb on - strand, within CSW01_18585at 839.892 kb on - strand, within CSW01_18585at 840.002 kb on + strand, within CSW01_18585at 840.002 kb on + strand, within CSW01_18585at 840.010 kb on - strand, within CSW01_18585at 840.010 kb on - strand, within CSW01_18585at 840.010 kb on - strand, within CSW01_18585at 840.020 kb on - strand, within CSW01_18585at 840.020 kb on - strand, within CSW01_18585at 840.141 kb on + strand, within CSW01_18585at 840.232 kb on + strandat 840.434 kb on - strand, within CSW01_18590at 840.437 kb on - strand, within CSW01_18590at 840.445 kb on + strand, within CSW01_18590at 840.474 kb on + strand, within CSW01_18590at 840.533 kb on - strand, within CSW01_18590at 840.547 kb on - strand, within CSW01_18590at 840.843 kb on + strand, within CSW01_18590at 840.862 kb on + strand, within CSW01_18590at 840.862 kb on + strand, within CSW01_18590at 840.915 kb on - strand, within CSW01_18590at 840.972 kb on + strand, within CSW01_18590at 840.980 kb on - strand, within CSW01_18590at 840.980 kb on - strand, within CSW01_18590at 841.004 kb on - strand, within CSW01_18590at 841.092 kb on - strand, within CSW01_18590at 841.227 kb on + strandat 841.227 kb on + strandat 841.289 kb on + strandat 841.356 kb on - strand, within CSW01_18595at 841.398 kb on + strand, within CSW01_18595at 841.552 kb on - strand, within CSW01_18595at 841.552 kb on - strand, within CSW01_18595at 841.576 kb on + strand, within CSW01_18595at 841.660 kb on - strandat 841.677 kb on + strandat 841.715 kb on - strandat 841.790 kb on - strandat 841.816 kb on + strandat 841.874 kb on + strand, within CSW01_18600at 841.874 kb on + strand, within CSW01_18600at 841.881 kb on + strand, within CSW01_18600at 841.923 kb on + strand, within CSW01_18600at 841.923 kb on + strand, within CSW01_18600at 841.923 kb on + strand, within CSW01_18600at 841.944 kb on - strand, within CSW01_18600at 841.965 kb on - strand, within CSW01_18600at 842.002 kb on + strand, within CSW01_18600at 842.194 kb on + strand, within CSW01_18600at 842.204 kb on + strand, within CSW01_18600at 842.212 kb on - strand, within CSW01_18600at 842.218 kb on + strand, within CSW01_18600at 842.218 kb on + strand, within CSW01_18600at 842.218 kb on + strand, within CSW01_18600at 842.226 kb on - strand, within CSW01_18600at 842.226 kb on - strand, within CSW01_18600at 842.226 kb on - strand, within CSW01_18600at 842.226 kb on - strand, within CSW01_18600at 842.248 kb on - strand, within CSW01_18600

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Per-strain Table

Position Strand Gene LocusTag Fraction ICP3_phage_4.1_MOI_rep1
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839,431 + +1.7
839,509 - -1.1
839,567 + CSW01_18585 0.14 -0.6
839,575 - CSW01_18585 0.15 +0.2
839,643 - CSW01_18585 0.24 +0.4
839,643 - CSW01_18585 0.24 +1.7
839,799 + CSW01_18585 0.44 -1.3
839,804 + CSW01_18585 0.45 +1.6
839,812 - CSW01_18585 0.46 +0.4
839,892 - CSW01_18585 0.56 -0.3
840,002 + CSW01_18585 0.71 -1.9
840,002 + CSW01_18585 0.71 -0.5
840,010 - CSW01_18585 0.72 +0.9
840,010 - CSW01_18585 0.72 +0.3
840,010 - CSW01_18585 0.72 +0.5
840,020 - CSW01_18585 0.73 +0.6
840,020 - CSW01_18585 0.73 +0.9
840,141 + CSW01_18585 0.89 +0.6
840,232 + -0.7
840,434 - CSW01_18590 0.12 -1.4
840,437 - CSW01_18590 0.12 +1.2
840,445 + CSW01_18590 0.13 +0.9
840,474 + CSW01_18590 0.16 -1.1
840,533 - CSW01_18590 0.22 -1.1
840,547 - CSW01_18590 0.24 +2.0
840,843 + CSW01_18590 0.55 +1.7
840,862 + CSW01_18590 0.57 -1.4
840,862 + CSW01_18590 0.57 +0.9
840,915 - CSW01_18590 0.63 -0.6
840,972 + CSW01_18590 0.69 +0.1
840,980 - CSW01_18590 0.70 -2.0
840,980 - CSW01_18590 0.70 -0.5
841,004 - CSW01_18590 0.73 -1.3
841,092 - CSW01_18590 0.82 +1.2
841,227 + -1.6
841,227 + -0.3
841,289 + +0.5
841,356 - CSW01_18595 0.26 +2.6
841,398 + CSW01_18595 0.37 +0.6
841,552 - CSW01_18595 0.77 -0.3
841,552 - CSW01_18595 0.77 +0.8
841,576 + CSW01_18595 0.84 -2.6
841,660 - -0.8
841,677 + -2.3
841,715 - +0.2
841,790 - +0.1
841,816 + +0.9
841,874 + CSW01_18600 0.11 -1.6
841,874 + CSW01_18600 0.11 +0.6
841,881 + CSW01_18600 0.12 -2.1
841,923 + CSW01_18600 0.15 -0.8
841,923 + CSW01_18600 0.15 -0.4
841,923 + CSW01_18600 0.15 +0.4
841,944 - CSW01_18600 0.16 -3.4
841,965 - CSW01_18600 0.18 -0.8
842,002 + CSW01_18600 0.20 -2.0
842,194 + CSW01_18600 0.34 -0.8
842,204 + CSW01_18600 0.35 +1.1
842,212 - CSW01_18600 0.35 -1.0
842,218 + CSW01_18600 0.36 +1.0
842,218 + CSW01_18600 0.36 -1.9
842,218 + CSW01_18600 0.36 +0.1
842,226 - CSW01_18600 0.36 -0.0
842,226 - CSW01_18600 0.36 +1.0
842,226 - CSW01_18600 0.36 +3.6
842,226 - CSW01_18600 0.36 +0.4
842,248 - CSW01_18600 0.38 -1.0

Or see this region's nucleotide sequence