Experiment: ICP3_phage_4.1_MOI_rep1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt CSW01_18550 and CSW01_18555 are separated by 651 nucleotides CSW01_18555 and CSW01_18560 are separated by 177 nucleotides CSW01_18560 and CSW01_18565 overlap by 20 nucleotides
CSW01_18550: CSW01_18550 - non-hemolytic enterotoxin lytic component L1, at 833,920 to 834,981
_18550
CSW01_18555: CSW01_18555 - hypothetical protein, at 835,633 to 835,728
_18555
CSW01_18560: CSW01_18560 - hypothetical protein, at 835,906 to 836,097
_18560
CSW01_18565: CSW01_18565 - L-threonine 3-dehydrogenase, at 836,078 to 837,109
_18565
Position (kb) 835
836 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 834.726 kb on + strand, within CSW01_18550 at 834.784 kb on + strand, within CSW01_18550 at 834.862 kb on - strand, within CSW01_18550 at 834.924 kb on + strand at 834.939 kb on + strand at 834.942 kb on - strand at 835.012 kb on - strand at 835.059 kb on + strand at 835.071 kb on + strand at 835.085 kb on - strand at 835.086 kb on + strand at 835.130 kb on - strand at 835.141 kb on + strand at 835.176 kb on - strand at 835.191 kb on - strand at 835.276 kb on + strand at 835.281 kb on + strand at 835.284 kb on - strand at 835.306 kb on - strand at 835.306 kb on - strand at 835.413 kb on + strand at 835.413 kb on + strand at 835.418 kb on + strand at 835.435 kb on + strand at 835.452 kb on + strand at 835.508 kb on - strand at 835.608 kb on - strand at 835.693 kb on + strand, within CSW01_18555 at 835.694 kb on + strand, within CSW01_18555 at 835.694 kb on + strand, within CSW01_18555 at 835.701 kb on - strand, within CSW01_18555 at 835.818 kb on - strand at 835.913 kb on + strand at 836.065 kb on - strand, within CSW01_18560 at 836.170 kb on + strand at 836.282 kb on + strand, within CSW01_18565 at 836.308 kb on + strand, within CSW01_18565 at 836.361 kb on + strand, within CSW01_18565 at 836.409 kb on - strand, within CSW01_18565 at 836.518 kb on + strand, within CSW01_18565 at 836.584 kb on + strand, within CSW01_18565
Per-strain Table
Position Strand Gene LocusTag Fraction ICP3_phage_4.1_MOI_rep1 remove 834,726 + CSW01_18550 0.76 -1.0 834,784 + CSW01_18550 0.81 -0.1 834,862 - CSW01_18550 0.89 +0.8 834,924 + +0.7 834,939 + -0.6 834,942 - +1.1 835,012 - +0.3 835,059 + -0.4 835,071 + -1.8 835,085 - +1.6 835,086 + -2.0 835,130 - +0.3 835,141 + -0.3 835,176 - -2.7 835,191 - +1.1 835,276 + +0.6 835,281 + +0.4 835,284 - -1.0 835,306 - -0.8 835,306 - -0.3 835,413 + -0.6 835,413 + -0.4 835,418 + +0.1 835,435 + +0.6 835,452 + -1.7 835,508 - +0.8 835,608 - -2.7 835,693 + CSW01_18555 0.62 -0.6 835,694 + CSW01_18555 0.64 -3.7 835,694 + CSW01_18555 0.64 +1.3 835,701 - CSW01_18555 0.71 +0.4 835,818 - +0.0 835,913 + +0.9 836,065 - CSW01_18560 0.83 -1.0 836,170 + -0.9 836,282 + CSW01_18565 0.20 -0.8 836,308 + CSW01_18565 0.22 +1.3 836,361 + CSW01_18565 0.27 -1.9 836,409 - CSW01_18565 0.32 -0.9 836,518 + CSW01_18565 0.43 +1.2 836,584 + CSW01_18565 0.49 -0.8
Or see this region's nucleotide sequence